BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD08RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1576 0.0
>3x_Contig1515
Length = 8855
Score = 1576 bits (795), Expect = 0.0
Identities = 900/929 (96%), Gaps = 7/929 (0%)
Strand = Plus / Minus
Query: 35 aatacacacgcttcaagagggaattatgtcagtt--tattccacaatgggcgaaagattt 92
|||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 3813 aatagacaagcttcaagagggaattatgtcagaagatatcccacaatgggcgaaagattt 3754
Query: 93 gaaagttgacaaagtgatgaggcgaaatagtgtcaatggtggtaaattgccggatccgtt 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3753 gaaagttgacaaagtgatgaggcgaaatagtgtcaatggtggtaaattgccggatccgtt 3694
Query: 153 tggaataaagaaactagagatcgaaggacagaagccccctaaggtgatagatcatgacgc 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3693 tggaataaagaaactagagatcgaaggacagaagccccctaaggtgatagatcatgacgc 3634
Query: 213 tcaatatcgtatagccaaactcactgcagaacgggcatggcagatatcttctgagcctct 272
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3633 tcaaaatcgtatagccaaactcactgcagaacgggcatggcagatatcttctgagcctct 3574
Query: 273 caaatctgttcccatgaatataattatgtcatatatgtctggtaacagcttgcaaattat 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3573 caaatctgttcccatgaatataattatgtcatatatgtctggtaacagcttgcaaattat 3514
Query: 333 tcctataatgactgctgtgatgttggtctcaaatcccatcaaaagtatcttaggagttaa 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3513 tcctataatgactgctgtgatgttggtctcaaatcccatcaaaagtatcttaggagttaa 3454
Query: 393 gtcaaaatttcaacatttaatcaacaaagataatgatgtaaccccgcctgtagttgcagc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3453 gtcaaaatttcaacatttaatcaacaaagataatgatgtaaccccgcctgtagttgcagc 3394
Query: 453 catgattatgtacgtgatataccaattaatcctcatgggaataggtttgcataagttgaa 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3393 catgattatgtacgtgatataccaattaatcctcatgggaataggtttgcataagttgaa 3334
Query: 513 ttcaatgggattgttcccaactacgtcaagtgattggcttgcttggcaacaaccaacgga 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3333 ttcaatgggattgttcccaactacgtcaagtgattggcttgcttggcaacaaccaacgga 3274
Query: 573 gtatttataccgtacgttaagtatttaattgaatgtagcgaaattaatacattatacaaa 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3273 gtatttataccgtacgttaagtatttaattgaatgtagcgaaattaatacattatacaaa 3214
Query: 633 agggtctatttgctagtattgctttgggtagaagccggggcagactctgcagtagtagga 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3213 agggtctatttgctagtattgctttgggtagaagccggggcagactctgcagtagtagga 3154
Query: 693 gtagtttctttatttttatgcttcatttcgaacaattcctgaacgttatatttctttgta 752
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3153 gtagtttctttatttttatgcttcatttcgaacaattcctgaacgttatatttcttgtaa 3094
Query: 753 tcagtccgataatctttatctacaacacacattccgatgttgttttttaaagcatttgca 812
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 3093 tcagtccgataatctttatctacaacacacattccgatgttg-tttttaaagcattgcaa 3035
Query: 813 cagcancagctttatcat-attctttcaatcaactntatgttctaatgaacctttgcttt 871
||||| ||| ||||||| |||||| |||||||| |||||||||||||||| |||||||
Sbjct: 3034 cagcacaagc-ttatcataattcttcaaatcaactttatgttctaatgaacc-ttgcttt 2977
Query: 872 -ctacgaattcagcaatatatttaatcatttccattttatncatagtactaaagtttcgt 930
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2976 cctacgaatccagcaatatatttaatcatttccattttatccatagtactaaagtttcgt 2917
Query: 931 ttggtgatctctactgcaaatnntactgg 959
||| ||||||||||||||||| ||||||
Sbjct: 2916 ttgttgatctctactgcaaattttactgg 2888
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7321
Number of Sequences: 1807
Number of extensions: 7321
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)