BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD11FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1240 220 4e-57
>3x_Contig1240
Length = 5468
Score = 220 bits (111), Expect = 4e-57
Identities = 167/183 (91%), Gaps = 4/183 (2%)
Strand = Plus / Plus
Query: 787 atggcttttcgaataatgattccaatagtaaaatcatcacagcagagatggtctggaaca 846
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6 atggcttttcgaataatgatcccaatagtaaaatcatcacagcagagatggtctggaaca 65
Query: 847 cagttaaaatgtacacggnaatatgacac-ggcaattcatgttcattaccgtaagcatgt 905
|||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||
Sbjct: 66 cagttaaaatgtacacgg-aatatgacacgggcaattcatgttcatcaccgtaagcatgt 124
Query: 906 ctgatacttgaantaatccattngnatcccttgaataaactttcga--caccaatagaag 963
|||||||| | ||||||||| | |||| | ||||||||||||| |||||||||||
Sbjct: 125 ctgatactgaagttaatccatttggatccttgaaataaactttcgaacaaccaatagaag 184
Query: 964 aga 966
|||
Sbjct: 185 aga 187
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7023
Number of Sequences: 1807
Number of extensions: 7023
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)