BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD11RM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1729 1754 0.0
3x_Contig1802 349 7e-96
>3x_Contig1729
Length = 15481
Score = 1754 bits (885), Expect = 0.0
Identities = 911/919 (99%), Gaps = 1/919 (0%)
Strand = Plus / Minus
Query: 44 gctttgatgactaccgttcattctcatcactgctactcaaaagactgttgatggtccatc 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13999 gctttgatgactaccgttcattc-catcactgctactcaaaagactgttgatggtccatc 13941
Query: 104 ccacaaggactggagaggtggtagaactgcttccggtaacattatcccatcctctactgg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13940 ccacaaggactggagaggtggtagaactgcttccggtaacattatcccatcctctactgg 13881
Query: 164 tgctgctaaggctgtcggtaaagtcttgccagaattgcaaggtaaattgaccggtatggc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13880 tgctgctaaggctgtcggtaaagtcttgccagaattgcaaggtaaattgaccggtatggc 13821
Query: 224 tttcagagtcccaaccgtcgatgtttctgtcgttgatttgaccgtcaagttggctaagga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13820 tttcagagtcccaaccgtcgatgtttctgtcgttgatttgaccgtcaagttggctaagga 13761
Query: 284 agccacttacgatgaaatcaaggccgctgttaagaaggcttctcaaggtaagctaaagaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13760 agccacttacgatgaaatcaaggccgctgttaagaaggcttctcaaggtaagctaaagaa 13701
Query: 344 tgttgttggttacactgaagactctgttgtttccagcgatttccttggtgacactcactc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13700 tgttgttggttacactgaagactctgttgtttccagcgatttccttggtgacactcactc 13641
Query: 404 caccatctttgacgcctctgctggtattcaattgtctccaaagttcgtcaaggttgttgc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13640 caccatctttgacgcctctgctggtattcaattgtctccaaagttcgtcaaggttgttgc 13581
Query: 464 ttggtacgataacgaatacggttactctgaaagagttgtcgatttggttgagcacgttgc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13580 ttggtacgataacgaatacggttactctgaaagagttgtcgatttggttgagcacgttgc 13521
Query: 524 ttaaattactcttttaagttaacgaacgcttttgatgagactaacgatatttcaagtgat 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13520 ttaaattactcttttaagttaacgaacgcttttgatgagactaacgatatttcaagtgat 13461
Query: 584 tccattttttacttctaagtttttatcacctttatcttaaccattctatgccagtctttg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13460 tccattttttacttctaagtttttatcacctttatcttaaccattctatgccagtctttg 13401
Query: 644 ctttatggactttgattcaaattatgaagggaagtttttacgccaaataaaaactactac 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13400 ctttatggactttgattcaaattatgaagggaagtttttacgccaaataaaaactactac 13341
Query: 704 aacaaattattaaaaaaaatgacgaataatatgaagtgtctaacgactgccaaaattatt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13340 aacaaattattaaaaaaaatgacgaataatatgaagtgtctaacgactgccaaaattatt 13281
Query: 764 cattccttttntatacacataaccatttcacttcatttactggtttgagtggtttattac 823
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13280 cattccttttttatacacataaccatttcacttcatttactggtttgagtggtttattac 13221
Query: 824 gtcgcctacaatgatcacctcaccatcagttccatcttttttatacttttcaaattattg 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13220 gtcgcctacaatgatcacctcaccatcagttccatcttttttatacttttcaaattattg 13161
Query: 884 ngtatatattatatatatatgaatattcaattttaagacacttttattatcattatatca 943
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13160 tgtatatattatatatatatgataattcaattttaagacacttttattatcattatatca 13101
Query: 944 ttaaaaatcatcatcaaaa 962
|||||| ||||||||||
Sbjct: 13100 ttaaaatcaatcatcaaaa 13082
>3x_Contig1802
Length = 45229
Score = 349 bits (176), Expect = 7e-96
Identities = 224/240 (93%)
Strand = Plus / Minus
Query: 68 catcactgctactcaaaagactgttgatggtccatcccacaaggactggagaggtggtag 127
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 15122 catcaccgctacccaaaagactgttgatggtccatcccaaaaggactggagaggtggtag 15063
Query: 128 aactgcttccggtaacattatcccatcctctactggtgctgctaaggctgtcggtaaagt 187
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct: 15062 aaccgcttccggtaacatcattccatcctctactggtgctgctaaggctgtcggtaaggt 15003
Query: 188 cttgccagaattgcaaggtaaattgaccggtatggctttcagagtcccaaccgtcgatgt 247
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 15002 cttgccagaattgcaaggtaagttgaccggtatggctttcagagtcccaaccgtcgatgt 14943
Query: 248 ttctgtcgttgatttgaccgtcaagttggctaaggaagccacttacgatgaaatcaaggc 307
|| || ||||| ||||| ||||||||||| |||||||| || |||||||||||||||||
Sbjct: 14942 ctccgttgttgacttgactgtcaagttggccaaggaagctacctacgatgaaatcaaggc 14883
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,001
Number of Sequences: 1807
Number of extensions: 11001
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 2
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)