BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD12FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1534 0.0
>3x_Contig1718
Length = 19496
Score = 1534 bits (774), Expect = 0.0
Identities = 848/865 (98%), Gaps = 6/865 (0%)
Strand = Plus / Plus
Query: 88 tactataagatctgagtacactttgctgttgcctggtacaatcgcatttctaaagatgcc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2281 tactataagatctgagtacactttgctgttgcctggtacaatcgcatttctaaagatgcc 2340
Query: 148 tggcggtttgaaatataaggtcgatattgactccgcggattttgatatctgatccaggca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2341 tggcggtttgaaatataaggtcgatattgactccgcggattttgatatctgatccaggca 2400
Query: 208 gtaatctaatgatccagacatcctttgatgttgttaaaaaacactacacgtacagattag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2401 gtaatctaatgatccagacatcctttgatgttgttaaaaaacactacacgtacagattag 2460
Query: 268 gcaccaccctctttcaggaaactgctatggaatacaatatttcatccaatactatgtaat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2461 gcaccaccctctttcaggaaactgctatggaatacaatatttcatccaatactatgtaat 2520
Query: 328 ttcttgaaatactccaaatgattcatttatcttttaactcgattatgtttacattttagt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2521 ttcttgaaatactccaaatgattcatttatcttttaactcgattatgtttacattttagt 2580
Query: 388 ttttttgttttcggtgtttacgaaatctttacgtgaaaagagttggcattatgttaatgg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2581 ttttttgttttcggtgtttacgaaatctttacgtgaaaagagttggcattatgttaatgg 2640
Query: 448 aaaaggttgacagaagacttttaaggctcatgcggcctttacatcggggtaagctaagcg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2641 aaaaggttgacagaagacttttaaggctcatgcggcctttacatcggggtaagctaagcg 2700
Query: 508 agaactattgcttactttattctatatatgatgataaataaacaagaaaatcagaattgg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2701 agaactattgcttactttattctatatatgatgataaataaacaagaaaatcagaattgg 2760
Query: 568 ctattattattctctccatgcgatataaacctcatcggttctaaacttctgcgtgacaat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2761 ctattattattctctccatgcgatataaacctcatcggttctaaacttctgcgtgacaat 2820
Query: 628 ggtttcagaaagatccttaacaaagtggcctgttctgtactctaatangcctgcctgggc 687
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2821 ggtttcagaaagatccttaacaaagtggcctgttctgtactctaataggcctgcctgggc 2880
Query: 688 aatcatcacaccattatcaatacagaatctgtcatcagttgcgtgtacttgtccattgga 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2881 aatcatcacaccattatcaatacagaatctgtcatcagttgcgtgtacttgtccattgga 2940
Query: 748 cctgtctttacacattttggccatcatctcttggagccttacgttgcatccaacaccacc 807
||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 2941 cctgtctttacacatttgggccatcatctcttgaagcctaacgttgcatccaacaccacc 3000
Query: 808 cactattagcacttgggtttgagtttacatgggccattgcacggttcggtaatctccaca 867
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3001 cactattagcactt-ggtttgagtttacatgggccattgcac-gttcggtaatctccaca 3058
Query: 868 agcatggcaaaattaatttttctgttaagaagtacactaggtctt-tacagtcacaagcc 926
|||||||| |||| |||||| |||| ||| |||| |||||||| |||||||||||| |
Sbjct: 3059 agcatggc-aaataaattttcctgtaaag-agtaacataggtcttctacagtcacaag-c 3115
Query: 927 tggtctcctgttcttgaatcaaata 951
|| ||||||||||||||||||||||
Sbjct: 3116 tgttctcctgttcttgaatcaaata 3140
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7106
Number of Sequences: 1807
Number of extensions: 7106
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)