BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD12RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1054 1715 0.0
>3x_Contig1054
Length = 4453
Score = 1715 bits (865), Expect = 0.0
Identities = 902/912 (98%), Gaps = 2/912 (0%)
Strand = Plus / Plus
Query: 43 gcttttgaacttttttatacaaattgtatactacaatatgatgcagaatgaaatacaggt 102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2617 gcttttgaacttttttatacaaatcgtatactacaatatgatgcagaatgaaatacaggt 2676
Query: 103 aattaggatggtatattttatatttacatatttatacatataaagcacacagatatgtgc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2677 aattaggatggtatattttatatttacatatttatacatataaagcacacagatatgtgc 2736
Query: 163 attggtatatgtatattacggtaaataagagcgaagatctcagtgtcacacgacatatcc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2737 attggtatatgtatattacggtaaataagagcgaagatctcagtgtcacacgacacatcc 2796
Query: 223 gtaaataatgatgatacatggcccaaaacttgttttgtttcgaggagggcccagaccctg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2797 gtaaataatgatgatacatggcccaaaacttgttttgtttcgaggagggcccagaccctg 2856
Query: 283 ttgaacggccttgggtgttatcataatcattattgttaccctcccgagaatcttacagaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2857 ttgaacggccttgggtgttatcataatcattattgttaccctcccgagaatcttacagaa 2916
Query: 343 acatgaaattccagtcacccagcaaagacgtacccactttataattacgtaccaccatca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2917 acatgaaattccagtcacccagcaaagacgtacccactttataattacgtaccaccatca 2976
Query: 403 tccgtaacccttgcaaagccgcttcagaagagagcagctcggtagctgaggtttatcggg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2977 tccgtaacccttgcaaagccgcttcagaagagagcagctcggtagctgaggtttatcggg 3036
Query: 463 atcaggttaggctggctgcccatgcaactcttgctcgcacgctcataagaagctagcaaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3037 atcaggttaggctggctgcccatgcaactcttgctcgcacgctcataagaagctagcaaa 3096
Query: 523 ccacgttcttttttatagctatatatggacaacaaccaacgtttaataatcaataaccca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3097 ccacgttcttttttatagctatatatggacaacaaccaacgtttaataatcaataaccca 3156
Query: 583 cgtagccgtattgcatctaacgacgtattgtttctcctcttactgccgtttcttgggaaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3157 cgtagccgtattgcatctaacgacgtattgtttctcctcttactgccgtttcttgggaaa 3216
Query: 643 aaattgcacttgagtgtttttgccaaattttttttttttttttttttgaatcatcggttg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3217 aaattgcacttgagtgtttttgccaaattttttttttttttttttttgaatcatcggttg 3276
Query: 703 gcagggtaaaatttccgttctgatggattctcccctcgaaatgattaaaccatgattctt 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3277 gcagggtaaaatttccgttctgatggattctcccctcgaaatgattaaaccatgattctt 3336
Query: 763 cactaatttaattaatctccaagaataaatacatatactatatataaatgacggtgtttg 822
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3337 cactaatttaattaatctccaagaataaatacatatactatatataaataacggtgtttg 3396
Query: 823 ccaagtattattttagcagaccacttgttcagcanagctaaacagacattttaagagaga 882
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 3397 ccaagtattattttagcagaccacttgttcagcaaagctaaacagacatttaaagagaga 3456
Query: 883 gcacgtacgtttcatcgaggtatagtgttatgctggacgagggattttgcgcttatattt 942
||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct: 3457 gcaggtacgtttcatcgaggtatagtgtta-gctggacgaggga-tttgcgcttatcatt 3514
Query: 943 gaaagattagca 954
||||||||||||
Sbjct: 3515 gaaagattagca 3526
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,434
Number of Sequences: 1807
Number of extensions: 21434
Number of successful extensions: 4088
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)