BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE02FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 1590 0.0
>3x_Contig1769
Length = 25795
Score = 1590 bits (802), Expect = 0.0
Identities = 856/870 (98%), Gaps = 3/870 (0%)
Strand = Plus / Plus
Query: 89 atattgcttttcatgctacattagccactaatgtgaaaagataacatcgaaactctttag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13407 atattgcttttcatgctacattagccactaatgtgaaaagataacatcgaaactctttag 13466
Query: 149 attacctttaaatgcctctcttcgtggaagtcggtccaatatcaccaagaccacgacgaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13467 attacctttaaatgcctctcttcgtggaagtcggtccaatatcaccaagaccacgacgaa 13526
Query: 209 tagaggcgcaggagacattcttccatctgtcaaaagaagtgaatatgctgcagccagaca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13527 tagaggcgcaggagacattcttccatctgtcaaaagaagtgaatatgctgcagccagaca 13586
Query: 269 accaataacacagcattacataagagaagaggtactttttctatcaccgactggaattta 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13587 accaataacacagcattacataagagaagaggtactttttctatcaccgactggaattta 13646
Query: 329 aaagccgtccggaaaatcccattcttagattggacaatctgatgtttaactcttgctttt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13647 aaagccgtccggaaaatcccattcttagattggacaatctgatgtttaactcttgctttt 13706
Query: 389 tttctctcccttagcagctcttgctaggaagcaattatcttgtgcaggcttaaagtttca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13707 tttctctcccttagcagctcttgctaggaagcaattatcttgtgcaggcttaaagtttca 13766
Query: 449 tggagaaccctattgacctggacctgtgcattgtatttctaatcgctacgcgttctgtgc 508
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 13767 tggagaaccctattgacctggacctgtgcattgtatttctaaagtctacgcgttctgtgc 13826
Query: 509 agttatactgagacatcaaatatggctgtgaagaaggagttccaataaagttatttttgg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13827 agttatactgagacatcaaatatggctgtgaagaaggagttccaataaagttatttttgg 13886
Query: 569 attagctaatgtcagggacaaaggaaatgaatgcagctctcccttgcaccagagaatggt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13887 attagctaatgtcagggacaaaggaaatgaatgcagctctcccttgcaccagagaatggt 13946
Query: 629 ctatgggagtgcaatcttccgtcgtccattgacaccagctcggttcgtacagaaagataa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13947 ctatgggagtgcaatcttccgtcgtccattgacaccagctcggttcgtacagaaagataa 14006
Query: 689 tatttacctgccgaaaaaaacagaccaggcagtctggtgctggcgtgaggctccccagaa 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14007 tatttacctgccgaaaaaaacagaccaggcagtctggtgctggcgtgaggctccccagaa 14066
Query: 749 ggtctaggcccacacagccaaaacgacttcttcgatcactttagtacgagagggcaagcc 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 14067 ggtctaggcccacacagccaaaacgacttcttcgatcactttagtacgagagggcaggcc 14126
Query: 809 ccagtcccataagtttgtaactggtaactactattccaaatccgtcatcacgtatgccct 868
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 14127 ccagtcccattagtttgtaactggtaactactattccaatcccgtcatcacgtatg-cct 14185
Query: 869 tcggcaggtacatactaaatgatgagcttatgttttttcccg-aatctctttttgaggta 927
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 14186 tcggcaggtacatactaaatgatgagcttatgttttttcccgaaatctcttcttgaggta 14245
Query: 928 gaataccaagcc-ttggttcatgccctgtt 956
||||| |||||| ||| |||||||| ||||
Sbjct: 14246 gaataacaagccattgtttcatgccttgtt 14275
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5295
Number of Sequences: 1807
Number of extensions: 5295
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)