BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE02RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 1469 0.0
>3x_Contig1577
Length = 10627
Score = 1469 bits (741), Expect = 0.0
Identities = 803/821 (97%), Gaps = 2/821 (0%)
Strand = Plus / Minus
Query: 50 cttatatgatatttttattcaacaatttatatatgaacagtatatgcgatattttgagta 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6012 cttatatgatatttttattcaacaatttatatatgaacagtatatgcgatattttgagta 5953
Query: 110 gtttatgttttattttttctttcgaagtatgtatggaagggacactagcaaatggttgtt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5952 gtttatgttttattttttctttcgaagtatgtatggaagggacactagcaaatggttgtt 5893
Query: 170 gacttctttcttttgttcgaaattatggtacgagagcgagtcagccagagatttcatgga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5892 gacttctttcttttgttcgaaattatggtacgagagcgagtcagccagagattccatgga 5833
Query: 230 gtcttctgggactgagtcctccaaaacttttgtcaataataccaactcttttctttcaat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5832 gtcttctgggactgagtcctccaaaacttttgtcaataataccaactcttttctttcaat 5773
Query: 290 ttgcatttcagtattgaaacgttccttgctgctctttatcttgtcgtacaacaactgctt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5772 ttgcatttcagtattgaaacgttccttgctgctctttatcttgtcgtacaacaactgctt 5713
Query: 350 ttgctcgtcagtgactttttctttccaaacctttttacatgatttacacatctcttggta 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5712 ttgctcgtcagtgactttttctttccaaacctttttacatgatttacacatctcttggta 5653
Query: 410 cctgaggtgtgcgttaagcatagaatccatttttgtctgtgaatgagatattattttcat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5652 cctgaggtgtgcgttaagcatagaatccatttttgtctgtgaatgagatattattttcat 5593
Query: 470 aagtggagtatgtctttccaagtacgtgggacggtgcattggagcttcttcttgttttat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5592 aagtggagtatgtctttccaagtacgtgggacggtgcattggagcttcttcttgttttat 5533
Query: 530 gtacctctgttcccaaattagattaaactgtagtttatattttgagcgaaacaaaagata 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5532 gtacctctgttcccaaattagattaaactgtagtttatattttgagcgaaacaaaagata 5473
Query: 590 tgcacttgaaataggacacgatattgcaaggtaccttgccagttcttcgtttcctaattt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5472 tgcacttgaaataggacacgatattgcaaggtaccttgccagttcttcgtttcctaattt 5413
Query: 650 tctgaaatcgatcttattgaatttgaagaacaacgcatgataaacccttctttccgtgat 709
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5412 tctgaaatcgatcttattgaatttgaagaacaacgcatgataaacccttcttttcgtgat 5353
Query: 710 tgataatgattcccattctgcccttattcgcctcaacaacagaatttgactcctatgatc 769
||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct: 5352 tgataatgattcccattctgcccttattcgcctcaccaaaggaatatgactcctatgatc 5293
Query: 770 tttataatcagcaataatattaagcctgttgatttgcaactgtaaattatatgggaat-c 828
||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||| |
Sbjct: 5292 tttataatcagcaataatattaagcctgtcgatttgcagctgtaaataatattggaatac 5233
Query: 829 atcttgggggtctctgatcaattttttggaaggatttcttg 869
||| | | ||||||||||||| | | | |||||||||||||
Sbjct: 5232 atc-tagtggtctctgatcaagtctcttgaaggatttcttg 5193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9543
Number of Sequences: 1807
Number of extensions: 9543
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)