BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE03FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1080 1505 0.0
>3x_Contig1080
Length = 4249
Score = 1505 bits (759), Expect = 0.0
Identities = 857/875 (97%), Gaps = 11/875 (1%)
Strand = Plus / Minus
Query: 89 agaaagggaagttcttgccttaactatattttaaaagtttcctatatgaacctcattctg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 agaaagggaagttcttgccttaactatattttaaaagtttcctatatgaacctcattctg 925
Query: 149 caaacgaaaatatgtatatacgacattatcctaaaggaatagtatcacgtaaagcaatac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 caaacgaaaatatgtatatacgacattatcctaaaggaatagtatcacgtaaagcaatac 865
Query: 209 ttgtaaatatagtcaacagatgtttaacaagcctattaaaaagatgtgtgctctcagagc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ttgtaaatatagtcaacagatgtttaacaagcctattaaaaagatgtgtgctctcagagc 805
Query: 269 cagtgttcattgacataacatactgagatggaataatcacttctgggattc-agaatcgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 804 cagtgttcattgacataacatactgagatggaataatcacttctgggattccagaatcgt 745
Query: 328 attttgagtatacgtcagtccagtataatctcaaagctggatgttgcaaacccaattgag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attttgagtatacgtcagtccagtataatctcaaagctggatgttgcaaacccaattgag 685
Query: 388 tgatcttttggacttcctcattagccaaagaaaaactaaagatatcttgcgcttgttgga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgatcttttggacttcctcattagccaaagaaaaactaaagatatcttgcgcttgttgga 625
Query: 448 tcctttcgatcttcgaagacgtagttactggcaagattccacgctcatagacccatgata 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcctttcgatcttcgaagacgtagttactggcaagattccacgctcatagacccatgata 565
Query: 508 acaagatttgagcctcactcttgttatacttctttgacaattcagcgatatattggtaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acaagatttgagcctcactcttgttatacttctttgacaattcagcgatatattggtaaa 505
Query: 568 aaggtagcttatcagcatcttctggtcttctttgcaaaggacctaatggtgagtaggcct 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaggtagcttatcagcatcttctggtcttctttgcaaaggacctaatggtgagtaggcct 445
Query: 628 caagt-aaataccattcttttgactgaattcaacaataccggggagtttgattttgcaag 686
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 caagtaaaataccattcttttgactgaattcaacaatacc-gggagtttgattttgcaag 386
Query: 687 aatggagagaattcaatttggttcacctgcggtttaacctctgccactgcaagcaatttc 746
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 aatggagagaattcaatttggtctccctgcggtttaacctctgccactgcaagcaatttc 326
Query: 747 tcc-aattcttttacagcaaagtttgaaacaccgatgttcttaagcctttccagacttgt 805
||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tccaaatgcttttacagcaaagtttgaaacaccgatgttctt-agcctttccagacttgt 267
Query: 806 atagttcttccaaatacttccaattagcctcgacatccaa-ttgctttccttaa-tata- 862
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 266 atagttcttccaaatacttccaattagcctcgacatccaatttgctttccttaattatag 207
Query: 863 ggagagtgcaatagatac-agttcacgtaatcaacaccgagcttcttcattgatgtctct 921
|||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 206 ggagagtgcaatagatacaagtccacgtaatcaacaccgagcttcttcaatgatgtctct 147
Query: 922 taggc-actttagggttctcag-aagctgtttcaa 954
|||| |||||||||||||||| ||||||||||||
Sbjct: 146 aaggcaactttagggttctcagaaagctgtttcaa 112
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6891
Number of Sequences: 1807
Number of extensions: 6891
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)