BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE03RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1710 1600 0.0
>3x_Contig1710
Length = 16151
Score = 1600 bits (807), Expect = 0.0
Identities = 895/923 (96%), Gaps = 2/923 (0%)
Strand = Plus / Minus
Query: 48 tgagagtcttgagattgaagccaggtagaaagtacaccaccttgggtaagctatctactt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11548 tgagagtcttgagattgaagccaggtagaaagtacaccaccttgggtaagctatctactt 11489
Query: 108 ccgttggttggaaatacgaagatgtcgttgccaagttggaagaaaagagaaaggctagat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11488 ccgttggttggaaatacgaagatgtcgttgccaagttggaagaaaagagaaaggctagat 11429
Query: 168 ctgctgaatactacttgaagaagaaggcttacaacgccgtcgttgccaacatttctgcta 227
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11428 ctgctgaatactacttgaagaagaaggcttacaacgccgtcgttgccaacaagtctgcta 11369
Query: 228 ctgttggtactgaagtttccgaaaagttggctgctctaggttactaaactccatcatcaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11368 ctgttggtactgaagtttccgaaaagttggctgctctaggttactaaactccatcatcaa 11309
Query: 288 acaacatataaattttctaaagctcatcaaattgtatatcatttgtaaaacgttattacc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11308 acaacatataaattttctaaagctcatcaaattgtatatcatttgtaaaacgttattacc 11249
Query: 348 atctttacaattttattaatattaattgattgatgtattgaatagttacattacgacaat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11248 atctttacaattttattaatattaattgattgatgtattgaatagttacattacgacaat 11189
Query: 408 aataaagaagctatatggttcttgagggtatcgccctgggccgcgatttttttctatgca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11188 aataaagaagctatatggttcttgagggtatcgccctgggccgcgatttttttctatgca 11129
Query: 468 tgattatatatttgtataactgtccttgatctgagtactattctgtaatacaaaccatac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11128 tgattatatatttgtataactgtccttgatctgagtactattctgtaatacaaaccatac 11069
Query: 528 atgcactaaccgataataaatagtctttttatgaaatatgcttaaaatgttcataaactc 587
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 11068 atgcactaaccgataataaatagtcttttcatgaaatatgcttaaaatgttcataaactc 11009
Query: 588 cgaatgttatgcaggtagatggaatggctcgtactaagtttgcaaacaaacccttataaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11008 cgaatgttatgcaggtagatggaatggctcgtactaagtttgcaaacaaacccttataaa 10949
Query: 648 atcctgcaataccattagtatgccagatagatcgtattagagaattcattttactgtttt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10948 atcctgcaataccattagtatgccagatagatcgtattagagaattcattttactgtttt 10889
Query: 708 cattatgttcagttctgaaggtttgtaaattagtcttttataatttgcacggatacacag 767
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 10888 cattatgttcagttctgaaggtttgtaaattagtctttaataattgcaacggatacacag 10829
Query: 768 aactgacagaaatcatttttgaaagtgatattatgcctatggtttctaccgca-ttaacc 826
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 10828 aactgacagaaatcatttttgaaagtgatattatgcctatggtttctaccgcatttaacc 10769
Query: 827 tnncttnctgtatatcatttctatcatgtaaattatttattttcaagttatcatatattt 886
| || |||||||||||||||||||||||||| |||| |||||| |||||||||||
Sbjct: 10768 tcctttcctgtatatcatttctatcatgtaaatattttagtttcaatgtatcatatattg 10709
Query: 887 gcaaatacaatgcaactttgagttaccccatataaggacggtactaaacctctccaaaaa 946
||||||||||| || ||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 10708 caaaatacaatgc-accttgagttacaccaaataaggacggtactaaacctctccaaaat 10650
Query: 947 tgttttaacccttcttntgtata 969
|||||||||||||| ||||||
Sbjct: 10649 gtttttaacccttcttctgtata 10627
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8378
Number of Sequences: 1807
Number of extensions: 8378
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)