BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE04FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1146 1570 0.0
>3x_Contig1146
Length = 4612
Score = 1570 bits (792), Expect = 0.0
Identities = 848/864 (98%), Gaps = 3/864 (0%)
Strand = Plus / Minus
Query: 82 ctcgggaaggttgatggtaagatcatctgttttgttggaccacctggtgtgggtaagaca 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 ctcgggaaggttgatggtaagatcatctgttttgttggaccacctggtgtgggtaagaca 1039
Query: 142 tccattggtaagtccattgctcgctctttgaacagacaatttttcagattctcagtaggt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 tccattggtaagtccattgctcgctctttgaacagacaatttttcagattctcagtaggt 979
Query: 202 ggtatgactgatgtggctgaaatcaaaggtcacagaagaacctatattggtgctttgcca 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 ggtatgactgatgtggctgaaatcaaaggtcacagaagaacctatattggtgctttgcca 919
Query: 262 ggtagagtcatccaagctttaaagaaatgtcaaactcaaaacccgttgattttgattgac 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ggtagagtcatccaagctttaaagaaatgtcaaactcaaaacccgttgattttgattgac 859
Query: 322 gaaattgataagattgggcacggcggtatccatggggaccccgccgcagcgctattagaa 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaaattgataagattgggcacggcggtatccatggggaccccgccgcagcgctattagaa 799
Query: 382 ttattagacccagaacaaaacaatagtttcttggacaactatatggatattccaatcgat 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ttattagacccagaacaaaacaatagtttcttggacaactatatggatattccaatcgat 739
Query: 442 ttgtctaaagttttattcgtttgcaccgctaattctttagaaactatcccaagaccattg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttgtctaaagttttattcgtttgcaccgctaattctttagaaactatcccaagaccattg 679
Query: 502 ttggaccgtatggaagtcattgaactaactggttatgttgctgaagaaaaggttaagatc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttggaccgtatggaagtcattgaactaactggttatgttgctgaagaaaaggttaagatc 619
Query: 562 gcagaaaattatctatcgccaagtgcaaagaaatctgctggtttagataatgctaacgtc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gcagaaaattatctatcgccaagtgcaaagaaatctgctggtttagataatgctaacgtc 559
Query: 622 aacattaccgagaatgctattgtttctttgatgaagcattactgcagagaaagtggtgtt 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aacattaccgagaatgctattgtttctttgatgaagcattactgcagagaaagtggtgtt 499
Query: 682 agatcattgaaaaagcacattgagaaaatctaccgtaaggctgcgttgaacgtcgttaaa 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agatcattgaaaaagcacattgagaaaatctaccgtaaggctgcgttgaacgtcgttaaa 439
Query: 742 caattgagcatagacgataaacctatgggaaatgtagaagtgaaggatc-aaaggatata 800
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 438 caattgagcatagacgataaacctatggaaaatgaagaagtgaaggatcaaaaggatata 379
Query: 801 aaggtc-agcaatccgaaaacaaatctagtgcttgagcatcgaccgtanaatccactact 859
|||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 378 aaggtcaagcaatccgaaaacaaatctagtgctgaagcatcgaccgtagaatccactact 319
Query: 860 gaagaaaatgaactgatcaagacccannaat-tcacgattacaagggttcctttaaagta 918
|||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||
Sbjct: 318 gaagaaaatgaactgatcaagacccaaaaatctcacgataacaagggttccttagaagta 259
Query: 919 ccggaacctgttnttgtgactgta 942
|||||| ||||| ||||||||||
Sbjct: 258 ccggaaactgtttctgtgactgta 235
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6630
Number of Sequences: 1807
Number of extensions: 6630
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)