BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE04RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1534 0.0
>3x_Contig1728
Length = 20685
Score = 1534 bits (774), Expect = 0.0
Identities = 895/922 (97%), Gaps = 10/922 (1%)
Strand = Plus / Minus
Query: 42 cttctttctt-aacgttgctgactaacattgtgaatatggagaaagtgttgcaaattttg 100
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13571 cttctttcttcaacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttg 13512
Query: 101 ttgcggagatactactaacgtcagatgataaagggaccattctcgagctgcttttgaatg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13511 ttgcggagatactactaacgtcagatgataaagggaccattctcgagctgcttttgaatg 13452
Query: 161 ccttatacgacttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13451 ccttatacgacttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttc 13392
Query: 221 tctgtggtgtagaaaaattgaaagaaagagtttttgaaactagacacattgaaataatca 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13391 tctgtggtgtagaaaaattgaaagaaagagtttttgaaactagacacattgaaataatca 13332
Query: 281 ggatgctgttcctgtgccggtgtgaagagaatatcttacaaactactattcaaagcattt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13331 ggatgctgttcctgtgccggtgtgaagagaatatcttacaaactactattcaaagcattt 13272
Query: 341 acttgaaatatatgctattttccaacttatctgctcctgaatttcttcaaacattagcca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13271 acttgaaatatatgctattttccaacttatctgctcctgaatttcttcaaacattagcca 13212
Query: 401 tgcatgtcaagagtgataacggctatgaatacatatccagaacaataggcagtttccgtg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13211 tgcatgtcaagagtgataacggctatgaatacatatccagaacaataggcagtttccgtg 13152
Query: 461 acttttgtattgtcaactataatcaatctttagaaggatatgaagttccacaagacgcat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13151 acttttgtattgtcaactataatcaatctttagaaggatatgaagttccacaagacgcat 13092
Query: 521 tgtaccaagtacttgcctatgaattatttgattgtgagccttatgaaatctcggatcaat 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13091 tgtaccaagtacttgcctatgaattatttgattgtgagccttatgaaatctcggatcaat 13032
Query: 581 ttttgattgagatcgtcaaagcagattgtaactattccgatttatcagaagaatattatg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13031 ttttgattgagatcgtcaaagcagattgtaactattccgatttatcagaagaatattatg 12972
Query: 641 ctttcttaactgagttagtgacaatggaaagtaataactacaaggaaagctaaagtcatt 700
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12971 ctttcttaactgagttagtgacaatggaaagtaataactacaagg-aagctaaagtcatt 12913
Query: 701 ttggacctaccacagtttacgccagctgtctacggtgccattaatcctctgccaattttt 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12912 ttggacctaccacagtttacgccagctgtctacggtgccattaatcctctgccaattttt 12853
Query: 761 aaggagcttgttcttcgagtttttacctgataaattcgacttttttgtatcattgtttga 820
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12852 aa-gagcttgttctccgagtttttacctgataaattcgacttttttgtatcattgtttga 12794
Query: 821 taaagggtatgcaaagtccttttttaaatcaccatatccttttgaaaaattgctttaatt 880
| |||| |||||||||||| || | | |||||||||||| |||||||| |||| ||||||
Sbjct: 12793 t-aaggttatgcaaagtcc-ttctcagatcaccatatcc-tttgaaaatttgc-ttaatt 12738
Query: 881 tataccgcattaatgggggaggtctttagattcagaaaacattcttcctttcagcctata 940
||||||||| |||| |||||| | | ||| |||||||||| ||||||||||| ||| |
Sbjct: 12737 tataccgca-taattggggagtacataaga-tcagaaaacaatcttcctttcaagctaaa 12680
Query: 941 agatgtaaatttatgccaattt 962
||||| |||||||||| |||||
Sbjct: 12679 agatg-aaatttatgcaaattt 12659
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7955
Number of Sequences: 1807
Number of extensions: 7955
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)