BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE06FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1427 1578 0.0
>3x_Contig1427
Length = 10253
Score = 1578 bits (796), Expect = 0.0
Identities = 858/875 (98%), Gaps = 3/875 (0%)
Strand = Plus / Minus
Query: 86 tgaagaaattccttgagagagcagaaactcaagagaaacaaattaagaagttcgttcttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10168 tgaagaaattccttgagagagcagaaactcaagagaaacaaattaagaagttcgttcttg 10109
Query: 146 aacaacagagaaaatataaatggtcttccaaccaagggccagcttcacgtatatcatcag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10108 aacaacagagaaaatataaatggtcttccaaccaagggccagcttcacgtatatcatcag 10049
Query: 206 gatcgttgctatttcaggaacatttaccttctgttcgattgaggaagaattcttcagttg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10048 gatcgttgctatttcaggaacatttaccttctgttcgattgaggaagaattcttcagttg 9989
Query: 266 gctcatacctttcgaaatgtgaaagatatatacacccgtttgcgccgaccgaagttagag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9988 gctcatacctttcgaaatgtgaaagatatatacacccgtttgcgccgaccgaagttagag 9929
Query: 326 aaatacttctctatgatgttactaaatcgaaagaaaagatcgaaccaccagaatccacta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9928 aaatacttctctatgatgttactaaatcgaaagaaaagatcgaaccaccagaatccacta 9869
Query: 386 ttcttgtgcatgtacaaaagaaggaccttttcgcagttgtaaatggcggtagaatagcac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9868 ttcttgtgcatgtacaaaagaaggaccttttcgcagttgtaaatggcggtagaatagcac 9809
Query: 446 ctgatcagttgttggccgtaataaatcaatacgagaacggagggtggaagttgataggcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9808 ctgatcagttgttggccgtaataaatcaatacgagaacggagggtggaagttgataggcg 9749
Query: 506 atgtgaacagagatacttacaagattgtcttccagaagaattacatgagaccagcactca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9748 atgtgaacagagatacttacaagattgtcttccagaagaattacatgagaccagcactca 9689
Query: 566 tagagaccaaaggaaaaatagctatcactttatttggtattaccctaggatacatagccg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9688 tagagaccaaaggaaaaatagctatcactttatttggtattaccctaggatacatagccg 9629
Query: 626 ttgtccaaccactaatcgactatattaattatttcaatcgataaattaatattgtatact 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9628 ttgtccaaccactaatcgactatattaattatttcaatcgataaattaatattgtatact 9569
Query: 686 gtacaatccgaatgacactcatataggaaaaacagaattaanaatgtatgaatagttaat 745
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 9568 gtacaatccgaatgacactcatataggaaaaacagaattaaaaatgtatgaatagttaat 9509
Query: 746 ctttatatatatatctatagtacaatacccttctgatcaaccgtgtgtgttagaaatgac 805
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 9508 ctttatatatatatctatagtacaatacccttctgatcaaccgtgtgtgtagaaaatgac 9449
Query: 806 atccgaaaatgatcgacattatcagttcatttcaatgtctttttattcaccaaatagttt 865
|||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 9448 atccgaaattgatcgacattatcagttcatttcaatgtcttttaattcaccaataggttt 9389
Query: 866 tacaggttttgttcccccaa-aaacttttcgccttttatattgattcttatcaggtttta 924
|||||||||||||||||||| || |||||||||||| |||||||||||||| ||||||
Sbjct: 9388 tacaggttttgttcccccaagaaccttttcgcctttatcattgattcttatca-gtttta 9330
Query: 925 aagtactcaaacctccaagag-ttgattccaagct 958
|||||||||||||||||| || |||||||||||||
Sbjct: 9329 aagtactcaaacctccaaaagtttgattccaagct 9295
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9551
Number of Sequences: 1807
Number of extensions: 9551
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)