BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE06RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1705 1606 0.0
>3x_Contig1705
Length = 16734
Score = 1606 bits (810), Expect = 0.0
Identities = 853/861 (99%), Gaps = 6/861 (0%)
Strand = Plus / Plus
Query: 46 gctttaggtcaaaatgatagaggttatccaatactgatatttctacgaaattattatatg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4231 gctttaggtcaaaatgatagaggttatccaatactgatatttctacgaaattattatatg 4290
Query: 106 cccttacttatgttttgttagttttgaagaatccgtcaattcttcctttacccttagcaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4291 cccttacttatgttttgttagttttgaagaatccgtcaattcttcctttacccttagcaa 4350
Query: 166 cctttggtttcacaactttagccttttgaataggttgtttctttacggtttttgtgccat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4351 cctttggtttcacaactttagccttttgaataggttgtttctttacggtttttgtgccat 4410
Query: 226 ttggaatggctgtagacatagcagctttgataaggagctctctttccctttctgtttgta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4411 ttggaatggctgtagacatagcagctttgataaggagctctctttccctttctgtttgta 4470
Query: 286 atgtttcgttcttgtacttgtcgtatgagtcgaaacattgtttgatgttaagatttgaag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4471 atgtttcgttcttgtacttgtcgtatgagtcgaaacattgtttgatgttaagatttgaag 4530
Query: 346 attcatgtctaattagatcctggtatgcgagttgtgggatcaaggaaactagaagattac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4531 attcatgtctaattagatcctggtatgcgagttgtgggatcaaggaaactagaagattac 4590
Query: 406 acgacattatgcatttcagagatgatgctatatcttcaggtagcgattttggtattttaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4591 acgacattatgcatttcagagatgatgctatatcttcaggtagcgattttggtattttaa 4650
Query: 466 gagaagtagggaagttgttgttgattttgatgactttcttcagtagccattctactatca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4651 gagaagtagggaagttgttgttgattttgatgactttcttcagtagccattctactatca 4710
Query: 526 tttgaggttcgatacgataatacttgtcaccagcttcttccactgtatgtgatattttcc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4711 tttgaggttcgatacgataatacttgtcaccagcttcttccactgtatgtgatattttcc 4770
Query: 586 cgagacaactttcccataattttggaggtatcttctcccaattttcactgtgattattcg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4771 cgagacaactttcccataattttggaggtatcttctcccaattttcactgtgattattcg 4830
Query: 646 ttaatttctcttggtaatcagaactagtataaaagttagtatccatatcgagtgcgggtg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4831 ttaatttctcttggtaatcagaactagtataaaagttagtatccatatcgagtgcgggtg 4890
Query: 706 gaacgcaaggtgtaataaacgctagatcctcactagtaactttgttgttcctataat-at 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4891 gaacgcaaggtgtaataaacgctagatcctcactagtaactttgttgttcctataataat 4950
Query: 765 acccacatatattaaaag-taagtcatatttttcggcatatagtatcgaaacatcttcta 823
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4951 acccacatatattaaaagttaagtcatatttttcggcatatagtatcgaaccatcttcta 5010
Query: 824 gtatgtgtccatctttcctgttctctccattgatcaaaa--gtggattt-aatgtttgcg 880
|||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct: 5011 gtatgtgtccatctttcctgttctcttcattgatcaaaaatgtggatttaaatgtttgcg 5070
Query: 881 aatctgaagt-taatgatatt 900
|||||||||| ||||||||||
Sbjct: 5071 aatctgaagtataatgatatt 5091
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7645
Number of Sequences: 1807
Number of extensions: 7645
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)