BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE09FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1721 1487 0.0
>3x_Contig1721
Length = 17834
Score = 1487 bits (750), Expect = 0.0
Identities = 776/784 (98%), Gaps = 1/784 (0%)
Strand = Plus / Plus
Query: 95 aagatttgggatgccaagaattcgaaatcatagatgttaaccaaggaatcaatatcgggt 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16689 aagatttgggatgccaagaattcgaaatcatagatgttaaccaaggaatcaatatcgggt 16748
Query: 155 aaagattgacgcaattgttcctttcttgccacatcttcgggagtttcacctggggtcaat 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16749 aaagattgacgcaattgttcctttcttgccacatcttcgggagtttcacctggggtcaat 16808
Query: 215 gcagcacagaccaagtcatcaggcattgtaccatctagtggaccaattctgttctctgga 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16809 gcagcacagaccaagtcatcaggcattgtaccatctagtggaccaattctgttctctgga 16868
Query: 275 gcaatgtatttttcgatgacatctggagcatgaattggagcaaagatcttggtcacatct 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16869 gcaatgtatttttcgatgacatctggagcatgaattggagcaaagatcttggtcacatct 16928
Query: 335 tttcctgcgttgttctcaatgatagctggaccaccaggatgggcgctgatgaaatcagtc 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16929 tttcctgcgttgttctcaatgatagctggaccaccaggatgggcgctgatgaaatcagtc 16988
Query: 395 aaattgtatacgtaaccctcaatgaccacccaacagtctttgggagaagagtgctttgcg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16989 aaattgtatacgtaaccctcaatgaccacccaacagtctttgggagaagagtgctttgcg 17048
Query: 455 acttctgttggagaaacctttggtttcgtcatatcgaccttggcaccattttcaacgcta 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17049 acttctgttggagaaacctttggtttcgtcatatcgaccttggcaccattttcaacgcta 17108
Query: 515 tcattgaattgagaaatcaatgcaataccaaccgaaccggcaacaagaaaggcaccacca 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17109 tcattgaattgagaaatcaatgcaataccaaccgaaccggcaacaagaaaggcaccacca 17168
Query: 575 gtgatgactttcttaccgaacgaaaacgcactatagccagacttagctgatctcccaaaa 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17169 gtgatgactttcttaccgaacgaaaacgcactatagccagacttagctgatctcccaaaa 17228
Query: 635 cgcagagtagcactagacttatgaattggagatttactactggtgctagcaaatctcaac 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17229 cgcagagtagcactagacttatgaattggagatttactactggtgctagcaaatctcaac 17288
Query: 695 ccactaacacggttcttaccaaaaactcttacggctgatctcatagtaatgacgatgttg 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17289 ccactaacacggttcttaccaaaaactcttacggctgatctcatagtaatgacgatgttg 17348
Query: 755 ataccctagggcttttgttttctgattaaagattataccaaacanatntaaccttcaccg 814
||| ||||||| ||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct: 17349 ata-cctaggggctttgttttctgattaaagattataccaaacaaatttaacctcaaccg 17407
Query: 815 cactataaccaattcccaactgcgacatagctctacttatatatatatatatatatatat 874
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 17408 cactataaccaattcccaactgcgacatagctctacttatatatatatatatacatatat 17467
Query: 875 atat 878
||||
Sbjct: 17468 atat 17471
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,247
Number of Sequences: 1807
Number of extensions: 14247
Number of successful extensions: 3448
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)