BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE10RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1459 1612 0.0
>3x_Contig1459
Length = 6711
Score = 1612 bits (813), Expect = 0.0
Identities = 873/892 (97%), Gaps = 1/892 (0%)
Strand = Plus / Plus
Query: 44 gctttaccagaaactgcctcatcatacgttggtttgattggtggtgacttgtactactcc 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3282 gctttaccagaaactgcctcatcaaacgttggtttgattggtggtgacttgtactactcc 3341
Query: 104 atcaacgttcctgttgcagtcttcgacggtagcttatctgtagcttcctcttctgaagat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3342 atcaacgttcctgttgcagtcttcgacggtagcttatctgtagcttcctcttctgaagat 3401
Query: 164 ggttactctttcgacgcaagttactctgctgtctacttcgtcggtactgatgcattcaac 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3402 ggttactctttcgacgcaagttactctgctgtctacttcgtcggtactgatgcattcaac 3461
Query: 224 aatggtactttgaccggtgctgatggtgtcaatgaatctgaggaatcctctgtcctagtt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3462 aatggtactttgaccggtgctgatggtgtcaatgaatctgaggaatcctctgtcctagtt 3521
Query: 284 tctttcgaaggttccatcccagatggtcacgttgctgtcagagtcgtctacaaggccatc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3522 tctttcgaaggttccatcccagatggtcacgttgctgtcagagtcgtctacaaggccatc 3581
Query: 344 atctctggttccgccgaaagttactctaacaccgctgacttgtctctaccaagcttgcca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3582 atctctggttccgccgaaagttactctaacaccgctgacttgtctctaccaagcttgcca 3641
Query: 404 ggtgctctatctaagagagacaccactatcactttcacttccaccatctatgttactggt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3642 ggtgctctatctaagagagacaccactatcactttcacttccaccatctatgttactggt 3701
Query: 464 cctttggctggtaccgttgaatcttcttcctcttctgtttcttctgatgacaccgactct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3702 cctttggctggtaccgttgaatcttcttcctcttctgtttcttctgatgacaccgactct 3761
Query: 524 tctagcgaaacctctgccactgaaacatctggcgaaccatctgccactgaaacatctggt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3762 tctagcgaaacctctgccactgaaacatctggcgaaccatctgccactgaaacatctggt 3821
Query: 584 actgaatcaggctcatctgaaccaaccacttctgttgctaccgccaccgttactgacttg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3822 actgaatcaggctcatctgaaccaaccacttctgttgctaccgccaccgttactgacttg 3881
Query: 644 tctaccactgtcatcaccacttgcccaacttgtaccggttctcacaagactactgacgtc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3882 tctaccactgtcatcaccacttgcccaacttgtaccggttctcacaagactactgacgtc 3941
Query: 704 tacgtttccactgttactgctactgtcagtggtattgtcactgnatacactacctactgt 763
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3942 tacgtttccactgttactgctactgtcagtggtattgtcactgaatacactacctactgt 4001
Query: 764 ccaatcagtaccgtttcttaggttaagagtcacgaaagtaccgttcgaacttgtaccgtt 823
|||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||
Sbjct: 4002 ccaatcagtaccgtttctaaggttaagagtcacgaaggtaccgtcgaaacttgtaccgtt 4061
Query: 824 aacatttaccgagtcaccagcggtgtttacactggttagaccggattcatttcaattttc 883
|||||| || ||||||||||||||||||||||| | |||||| || |||| |||||| |
Sbjct: 4062 aacattcacgaagtcaccagcggtgtttacactgttaagaccgaatacattccaatttcc 4121
Query: 884 cagggtactaccgttactgacctgtcta-cactctaatcaccgtttgcccaa 934
||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 4122 aagggtactaccgttactgacctgtctaccactctagtcaccgtttgcccaa 4173
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5904
Number of Sequences: 1807
Number of extensions: 5904
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)