BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE11FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 1570 0.0
>3x_Contig1779
Length = 24855
Score = 1570 bits (792), Expect = 0.0
Identities = 860/878 (97%), Gaps = 5/878 (0%)
Strand = Plus / Minus
Query: 94 acagtggtctctaccaactctttcaatttctcaagaggatttgcattttctaacattgga 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13733 acagtggtctctaccaactctttcaatttctcaagaggatttgcattttctaacattgga 13674
Query: 154 tcgagtaaaacctctttcacgagtatcattaaatcattagaatcaacctcttcggtcttc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13673 tcgagtaaaacctctttcacgagtatcattaaatcattagaatcaacctcttcggtcttc 13614
Query: 214 tgtttcaacagatctgaaataactggaaccatttgtgcaaactgataaatcttgagaaca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13613 tgtttcaacagatctgaaataactggaaccatttgtgcaaactgataaatcttgagaaca 13554
Query: 274 tcttctaagttcccatttttttgaagtttctttgttagtctgcggatatctggaacacta 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13553 tcttctaagttcccatttttttgaagtttctttgttagtctgcggatatctggaacacta 13494
Query: 334 ggtaagcattcttcttgtagagaagatcttaattctaactgatccatgaaaaattcaact 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13493 ggtaagcattcttcttgtagagaagatcttaattctaactgatccatgaaaaattcaact 13434
Query: 394 agatcatgccttttggtaatctggtcgatgtcggtcaagggttgcttcagccactcgttc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13433 agatcatgccttttggtaatctggtcgatgtcggtcaagggttgcttcagccactcgttc 13374
Query: 454 aacaaccttacgccggaattagttttacatctattcaacaactggaaaagacttgaacat 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13373 aacaaccttacgccggaattagttttacatctattcaacaactggaaaagacttgaacat 13314
Query: 514 ttttgaggagagccgacgcttaaaagagcagtattaccctgtgagcctgtggggaacaca 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13313 ttttgaggagagccgacgcttaaaagagcagtattaccctgtgagcctgtggggaacaca 13254
Query: 574 tttagtgctttgattgcagaagcat--ctaactttacaaattgcgaaagagagtgatcca 631
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 13253 tttagtgctttgattgcagaagcatacgtaactttacaaattgcgaaagagagtgatcca 13194
Query: 632 caacttcaaagtttccaacgttggcctcgttattcattatgtttaggtagttcaataaga 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13193 caacttcaaagtttccaacgttggcctcgttattcattatgtttaggtagttcaataaga 13134
Query: 692 cactacatgcacctagacagtttgcagaaaactttgacactgataaggataattcatcac 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13133 cactacatgcacctagacagtttgcagaaaactttgacactgataaggataattcatcac 13074
Query: 752 cgcanagctttgctaaatcggcttcaacgtcttttccgttaaagtcgctaggcttaacaa 811
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13073 cgcaaagctttgctaaatcggcttcaacgtcttttccgttaaagtcgctaggcttaacaa 13014
Query: 812 aggatgcgacacaagaacagcgatcaatgacgctcaatatctttctttaaatcatttgcc 871
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 13013 aggatgcgacacaagaacagcgatcaatgacgctcaatatc-ttctttaaatcatttgcc 12955
Query: 872 atactaggattatcacgccaaatctgggaattagacatttccttataccaagttgaattt 931
||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||
Sbjct: 12954 atactaggattatcacg-caaatct-ggaattagacattcctttataccaagttgaatta 12897
Query: 932 aaccacttttttaagtagaaaaaaccttgttggctagt 969
||| ||||| | | |||| ||||||| |||| |||||
Sbjct: 12896 aacaactttctaagttagagaaaacctcgttgtctagt 12859
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7060
Number of Sequences: 1807
Number of extensions: 7060
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)