BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE11RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1459 1679 0.0
>3x_Contig1459
Length = 6711
Score = 1679 bits (847), Expect = 0.0
Identities = 902/918 (98%), Gaps = 2/918 (0%)
Strand = Plus / Plus
Query: 44 gctttaccagaaactgcctcatttt-cgttggtttgattggtggtgacttgtactactcc 102
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3282 gctttaccagaaactgcctcatcaaacgttggtttgattggtggtgacttgtactactcc 3341
Query: 103 atcaacgttcctgttgcagtcttcgacggtagcttatctgtagcttcctcttctgaagat 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3342 atcaacgttcctgttgcagtcttcgacggtagcttatctgtagcttcctcttctgaagat 3401
Query: 163 ggttactctttcgacgcaagttactctgctgtctacttcgtcggtactgatgctttctac 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 3402 ggttactctttcgacgcaagttactctgctgtctacttcgtcggtactgatgcattcaac 3461
Query: 223 aatggtactttgaccggtgctgatggtgtcaatgaatctgaggaatcctctgtcctagtt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3462 aatggtactttgaccggtgctgatggtgtcaatgaatctgaggaatcctctgtcctagtt 3521
Query: 283 tctttcgaaggttccatcccagatggtcacgttgctgtcagagtcgtctacaaggccatc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3522 tctttcgaaggttccatcccagatggtcacgttgctgtcagagtcgtctacaaggccatc 3581
Query: 343 atctctggttccgccgaaagttactctaacaccgctgacttgtctctaccaagcttgcca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3582 atctctggttccgccgaaagttactctaacaccgctgacttgtctctaccaagcttgcca 3641
Query: 403 ggtgctctatctaagagagacaccactatcactttcacttccaccatctatgttactggt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3642 ggtgctctatctaagagagacaccactatcactttcacttccaccatctatgttactggt 3701
Query: 463 cctttggctggtaccgttgaatcttcttcctcttctgtttcttctgatgacaccgactct 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3702 cctttggctggtaccgttgaatcttcttcctcttctgtttcttctgatgacaccgactct 3761
Query: 523 tctagcgaaacctctgccactgaaacatctggcgaaccatctgccactgaaacatctggt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3762 tctagcgaaacctctgccactgaaacatctggcgaaccatctgccactgaaacatctggt 3821
Query: 583 actgaatcaggctcatctgaaccaaccacttctgttgctaccgccaccgttactgacttg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3822 actgaatcaggctcatctgaaccaaccacttctgttgctaccgccaccgttactgacttg 3881
Query: 643 tctaccactgtcatcaccacttgcccaacttgtaccggttctcacaagactactgacgtc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3882 tctaccactgtcatcaccacttgcccaacttgtaccggttctcacaagactactgacgtc 3941
Query: 703 tacgtttccactgttactgctactgtcagtggtattgtcactgaatacactacctactgt 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3942 tacgtttccactgttactgctactgtcagtggtattgtcactgaatacactacctactgt 4001
Query: 763 ccaatcagtaccgttttctaggttaagagtcacgaaggtaccgtcgaaacttgtaccgtt 822
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4002 ccaatcagtaccgtttctaaggttaagagtcacgaaggtaccgtcgaaacttgtaccgtt 4061
Query: 823 aacattcacgaagtcaccagctgggtttacactgttaagaccgaatacattccaatttcc 882
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 4062 aacattcacgaagtcaccagcggtgtttacactgttaagaccgaatacattccaatttcc 4121
Query: 883 -agggtactaccgntactgacctgtctaccactctagtcaccgtttgccccacttgttct 941
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4122 aagggtactaccgttactgacctgtctaccactctagtcaccgtttgcccaacttgttct 4181
Query: 942 tgaaagaccgctactggt 959
||||||||||||||||
Sbjct: 4182 gaaaagaccgctactggt 4199
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5910
Number of Sequences: 1807
Number of extensions: 5910
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)