BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE12FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1534 0.0
>3x_Contig1517
Length = 8289
Score = 1534 bits (774), Expect = 0.0
Identities = 870/892 (97%), Gaps = 8/892 (0%)
Strand = Plus / Plus
Query: 87 tgaatcatctttggacctgctcatgtatggcaattgagctatgttccatactcccccatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5361 tgaatcatctttggacctgctcatgtatggcaattgagctatgttccatactcccccatt 5420
Query: 147 ttctaatgcttctttcgatactaaacaatccatcactgaatcttatcgcgatagtttgaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5421 ttctaatgcttctttcgatactaaacaatccatcactgaatcttatcgcgatagtttgaa 5480
Query: 207 ttcgacgattttcaataatagcgatgcaaagaaaccgaatgtcatgcttcaaactgccag 266
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5481 ttcgacgatttccaataatagcgatgcaaagaaaccgaatgtcatgcttcaaactgccag 5540
Query: 267 cacatcggcacctccatcaccagaactaccaatagaatcttcagaatccaatgatgattt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5541 cacatcggcacctccatcaccagaactaccaatagaatcttcagaatccaatgatgattt 5600
Query: 327 gattcccattgctagtatacctgatgaattgatgaaattgattgatttgttcattgatga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5601 gattcccattgctagtatacctgatgaattgatgaaattgattgatttgttcattgatga 5660
Query: 387 tttgaaacagcctaaatattccaggcctttaatgattacacaattatctcagatattcca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5661 tttgaaacagcctaaatattccaggcctttaatgattacacaattatctcagatattcca 5720
Query: 447 aaggttttatgagagatttgatagatcttgccaacaacattttaatgcattagcctcgcc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5721 aaggttttatgagagatttgatagatcttgccaacaacattttaatgcattagcctcgcc 5780
Query: 507 tggaagtgtgaatgttatgctcaacgcgagagaaacgagaaatagtggattgagtagtat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5781 tggaagtgtgaatgttatgctcaacgcgagagaaacgagaaatagtggattgagtagtat 5840
Query: 567 cttcaacagatccagaagtagtagttttcgaaatagcagcataagaacaagaactagaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5841 cttcaacagatccagaagtagtagttttcgaaatagcagcataagaacaagaactagaac 5900
Query: 627 taattctgaacagaattatcagcaattgttgactccagaagaaatatcccatcaaattaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5901 taattctgaacagaattatcagcaattgttgactccagaagaaatatcccatcaaattaa 5960
Query: 687 gctgcaagaggctaataatatcaaaacggaccagattatggatttgtgtgaaatgcg-aa 745
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 5961 gctgcaagaggctaataatatcaaaacggaccagattatggatttgtgtg-aatgcgaaa 6019
Query: 746 tattcaagaaaatactgcaagttggcacttgtgtcccaaatcatccaacaagacaggcga 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6020 tattcaagaaaatactgcaagttggcacttgtgtcccaaatcatccaacaagacaggcga 6079
Query: 806 aatcgactagttcgaatgaatggaaaatgac-agcctatttcgtaataatcccggatttn 864
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct: 6080 aatcgactagttcgaatgaatggaaaatgacaagcctatttcgtaataat-ccggagttt 6138
Query: 865 atttgatttgataagatgtttgatact-aattgnacacgatgaaagagtttagcagttcc 923
||| |||||||||||||| ||||| ||||| |||||||||||||||| ||||||||
Sbjct: 6139 attgagtttgataagatgttgaatactaaattgaacacgatgaaagagttaagcagttcg 6198
Query: 924 cggattacttgatttaccagcattttttagcgttaagattggaaacataaag 975
| || ||||||||||||||||| ||||||||||| ||| | |||||||||||
Sbjct: 6199 c-gaatacttgatttaccagca-tttttagcgtt-agagttgaaacataaag 6247
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7937
Number of Sequences: 1807
Number of extensions: 7937
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)