BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZE12RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1210 1715 0.0
>3x_Contig1210
Length = 6392
Score = 1715 bits (865), Expect = 0.0
Identities = 915/929 (98%), Gaps = 2/929 (0%)
Strand = Plus / Plus
Query: 45 gcttctttgaaggaattcgaagattaattggacaaggctgaagctcaaaaggttaaggac 104
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4954 gcttctttgaaggaattcgaagaaaaattggacaaggctgaagctcaaaaggttaaggac 5013
Query: 105 caagtcgctgctttgagagaattggtcgctagagttcaagccggtgaagaagtcgacgct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5014 caagtcgctgctttgagagaattggtcgctagagttcaagccggtgaagaagtcgacgct 5073
Query: 165 gaagagttgaagaccaagactgaagaattacaaaccgcttccatgaagttgttcgttcaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5074 gaagagttgaagaccaagactgaagaattacaaaccgcttccatgaagttgttcgaacaa 5133
Query: 225 atgtacaagaacgacgcttctaaccaacaaggtggtgaaccaaagcaataagtgtaatta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5134 atgtacaagaacgacgcttctaaccaacaaggtggtgaaccaaagcaataagtgtaatta 5193
Query: 285 gctgagagatacgatatcattgaaacatgcccagacactactctctttagttccttccgt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5194 gctgagagatacgatatcattgaaacatgcccagacactactctctttagttccttccgt 5253
Query: 345 tcgagaagaatgataaagttccatcgaaaatctaccaagatataatgatatttgttatga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5254 tcgagaagaatgataaagttccatcgaaaatctaccaagatataatgatatttgttatga 5313
Query: 405 ccaacctcccattttaattaaagatgttaaccgaaactattgacgtggtaggacacggtt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5314 ccaacctcccattttaattaaagatgttaaccgaaactattgacgtggtaggacacggtt 5373
Query: 465 tctttgatgactcttttagtattactgaagggttttacaactttttctcttcttactttt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5374 tctttgatgactcttttagtattactgaagggttttacaactttttctcttcttactttt 5433
Query: 525 ttttctttgtctcacaatttattcacctcaagcttattacttattgagtttctccatgta 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5434 ttttctttgtctcacaatttattcacctcaagcttattacttattgagtttctccatgta 5493
Query: 585 catatgtaaactacaaatatgtatgaagatgacaacctgtatataaaagactaatcaaac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5494 catatgtaaactacaaatatgtatgaagatgacaacctgtatataaaagactaatcaaac 5553
Query: 645 actatacgttaatttacatctttctatcaagagacctggcttggattctcctattcgtta 704
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5554 actatacgttaatttacatctttctatcaagagacctggcttgtattctcctattcgtta 5613
Query: 705 ttttggtgatgttacccatgtccacattaattctcaagaaaatcttgtcaatattttaaa 764
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5614 ttttgttgatgttacccatgtccacattaattctcaagaaaatcttgtcaatattttaaa 5673
Query: 765 ccctg-aaaatcccaatttgataaataaaggtcatatatacattaattatcacattaagg 823
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5674 acctgaaaaatcccaatttgataaataaaggtcatatatacattaattatcacattaagg 5733
Query: 824 ttgatagaacttttcgtcgtagcaaagatacaaataaaggctcaacattgctttcctgca 883
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5734 ttgatagaactttccgtcgtagcaaagatacaaataaaggctcaacattgctttcctgca 5793
Query: 884 tatgacactatgggtgtacaagtatctcctttgactaagatca-ttgccttagtggcgta 942
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 5794 tatgacactatgggtgtacaagtatctcctttgactaagatcatttgccttattggcgta 5853
Query: 943 ctagcattaagctcttcttttgattatat 971
||||||||| ||| | |||||||||||||
Sbjct: 5854 ctagcattaggctttgcttttgattatat 5882
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8799
Number of Sequences: 1807
Number of extensions: 8799
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)