BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF01FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1594 1641 0.0
>3x_Contig1594
Length = 9813
Score = 1641 bits (828), Expect = 0.0
Identities = 859/867 (99%), Gaps = 2/867 (0%)
Strand = Plus / Plus
Query: 86 ccaaatcattatttcaatgtttaatgggatcatttttgcgattccattattcaatgtgat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5203 ccaaatcattatttcaatgtttaatgggatcatttttgcgattccattattcaatgtgat 5262
Query: 146 ttacctctctgttttcgtaatagcacctttcactagccaagcagctgagcatattaccat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263 ttacctctctgttttcgtaatagcacctttcactagccaagcagctgagcatattaccat 5322
Query: 206 caagaatgactcagaacaaacaattgcctttaaggtgaagaccacagctcctaaggtata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5323 caagaatgactcagaacaaacaattgcctttaaggtgaagaccacagctcctaaggtata 5382
Query: 266 ctgtgtaagacctaatgccgctttggtgccagccggtgaaagcgttgatgttcaagtgat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5383 ctgtgtaagacctaatgccgctttggtgccagccggtgaaagcgttgatgttcaagtgat 5442
Query: 326 tcttttaggattgaaggaagaacctacaccagatttcaaatgtaaagataaattcttggt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5443 tcttttaggattgaaggaagaacctacaccagatttcaaatgtaaagataaattcttggt 5502
Query: 386 tatagctttgccagctccttacgatttaggtgaactgagtgtggccgaagcttggcctca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5503 tatagctttgccagctccttacgatttaggtgaactgagtgtggccgaagcttggcctca 5562
Query: 446 attggaagcagagttcaagaacaagggcctgtcaaagaagattaaggtaaattatcaact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5563 attggaagcagagttcaagaacaagggcctgtcaaagaagattaaggtaaattatcaact 5622
Query: 506 agatgctgaaccaagagtcgtggaaaatctagaaactgataacgtgcaaactgagactgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5623 agatgctgaaccaagagtcgtggaaaatctagaaactgataacgtgcaaactgagactgt 5682
Query: 566 cattccttcagccaaggaaactattgctagtggttcgaaagctacagaagagtccgctag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5683 cattccttcagccaaggaaactattgctagtggttcgaaagctacagaagagtccgctag 5742
Query: 626 tgaaccggtacaaaagaaatctgtcccggttgcatctgccaatactgacctggatactga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5743 tgaaccggtacaaaagaaatctgtcccggttgcatctgccaatactgacctggatactga 5802
Query: 686 aaagccaaaagttgtggaaagtgaaccaaagctcgatgaaaaggtcaaatctgataccag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5803 aaagccaaaagttgtggaaagtgaaccaaagctcgatgaaaaggtcaaatctgataccag 5862
Query: 746 cgcttacactgaaattattgcagaacccgctagtacgtcgaatattgcaccggccgtggt 805
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5863 cgctaacactgaaattattgcagaacccgctagtacgtcgaatattgcaccggccgtggt 5922
Query: 806 catttggatcgttatagggttcttactttggtatgggttatcttaggatacattctgatt 865
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5923 catttggatcgttataggtttcttactttggtattggttatcttaggatacattctgatt 5982
Query: 866 -agtgagggaactatcaaccatcgtantatatatgacaacatatttctcgactttgatag 924
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5983 aagtgagggaactatcaaccatcgtataatatatgacaacatatttctcgactttgatag 6042
Query: 925 aaatg-tgttatgaaatatattcgtat 950
||||| ||||||||| |||||||||||
Sbjct: 6043 aaatgttgttatgaattatattcgtat 6069
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6078
Number of Sequences: 1807
Number of extensions: 6078
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)