BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF01RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1578 1669 0.0
>3x_Contig1578
Length = 13178
Score = 1669 bits (842), Expect = 0.0
Identities = 904/918 (98%), Gaps = 6/918 (0%)
Strand = Plus / Minus
Query: 48 ctagccctttcttcatactacaattaaacttattcaattgcaaaaataccattaaaatgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11874 ctagccctttcttcatactacaattaaacttattcaattgcaaaaataccattaaaatgg 11815
Query: 108 gggtgtgcagaccctagtctcgcagacatcaacgtacccatcttatgtccttttactgaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11814 gggtgtgcagaccctagtctcgcagacatcaacgtacccatcttatgtccttttactgaa 11755
Query: 168 ttctcgaatgcatgaataaaactaaaaaataaaggcttggcttttagatgttaataatca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11754 ttctcgaatgcatgaataaaactaaaaaataaaggcttggcttttagatgttaataatca 11695
Query: 228 atcaaacaggctcagaacagtccggattaagccatctccccgtagcatccatggtacagc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11694 atcaaacaggctcagaacagtccggattaagccatctccccgtagcatccatggtacagc 11635
Query: 288 ataaactttgatttgttcgagctttaagggagtataactcacgtagaacaagtaagagaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11634 ataaactttgatttgttcgagctttaagggagtataactcacgtagaacaagtaagagaa 11575
Query: 348 ctcagtgtgctggaaaccttttttattcataattggaatctttaacccaattcgattact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11574 ctcagtgtgctggaaaccttttttattcataattggaatctttaacccaattcgattact 11515
Query: 408 tagattactttaaatcacacccagttttgacctttctgcataccgatgccattttttatc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11514 tagattactttaaatcacacccagttttgacctttctgcataccgatgccattttttatc 11455
Query: 468 tgaaactgtcaaacaaacatacaaacgttctgaaaaagaaaaaggattcaagaaggttaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11454 tgaaactgtcaaacaaacatacaaacgttctgaaaaagaaaaaggattcaagaaggttaa 11395
Query: 528 aaaaaagaaaaagctgtgggtatctattggatgagcgaagcagtaatacgtcgctcttac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11394 aaaaaagaaaaagctgtgggtatctattggatgagcgaagcagtaatacgtcgctcttac 11335
Query: 588 aattcatttgtaacgtgagaggaaacattatgtcttacatcagggccaagctagcctcga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11334 aattcatttgtaacgtgagaggaaacattatgtcttacatcagggccaagctagcctcga 11275
Query: 648 tgtaactttggctttaaaatcgagcttttgcgttgagctgaatgagcaaacataaaatga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11274 tgtaactttggctttaaaatcgagcttttgcgttgagctgaatgagcaaacataaaatga 11215
Query: 708 ttacaattatcggatcanactagaacgaanattgacaaagtctcanaagggaccctaatc 767
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 11214 ttacaattatcggatcaaactagaacgaaaattgacaaagtctcaaaagggaccctaatc 11155
Query: 768 aatgtagtcaactagaatgtantaaagc-ttgctatcatttctttacg-tcacgggatgt 825
||||||||||||||||||||| |||||| ||||||||||||| ||||| |||||||||||
Sbjct: 11154 aatgtagtcaactagaatgta-taaagctttgctatcatttc-ttacgttcacgggatgt 11097
Query: 826 tctcagtcaatctcccctgtatctaccatatatatctacaatgttcatactatttttatc 885
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 11096 tctcagtcaatctcccctgtatctacaatatatatctacaatgttcatactatttttatc 11037
Query: 886 cgctattngcggaactgac-aaacatgcattattttcatgtatgcaccaataggacgctt 944
||||||| ||||||||||| ||||||||||||||| |||||||||| |||| |||||||
Sbjct: 11036 cgctatttgcggaactgacaaaacatgcattatttccatgtatgca-caattagacgctt 10978
Query: 945 ccgtctcctgtattttcg 962
||||||||||||||||||
Sbjct: 10977 ccgtctcctgtattttcg 10960
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7239
Number of Sequences: 1807
Number of extensions: 7239
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)