BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF02FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig785 1598 0.0
>3x_Contig785
Length = 2769
Score = 1598 bits (806), Expect = 0.0
Identities = 863/875 (98%), Gaps = 6/875 (0%)
Strand = Plus / Plus
Query: 88 acaaccacatttctttttcttttagcttaaaaacgcaatggaatattatggattgtaaag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 acaaccacatttctttttcttttagcttaaaaacgcaatggaatattatggattgtaaag 1442
Query: 148 ttatatactaacataaacgttcctacggtcagttatactatataacggatcattaaacta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 ttatatactaacataaacgttcctacggtcagttatactatataacggatcattaaacta 1502
Query: 208 gtggttgtatctttttcagtgttttctttcgtaggaattcaaactggcttgaagaaaaaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 gtggttgtatctttttcagtgttttctttcgtaggaattcaaactggcttgaagaaaaaa 1562
Query: 268 ccggtcgaagtgccttacttcaattaggtaacagcttatttgatatcttctccaatgatt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 ccggtcgaagtgccttacttcaattaggtaacagcttatttgatatcttctccaatgatt 1622
Query: 328 tcggaccacgtcttgttttcctttttcaatagctcagtggtttcatctttgatcttagca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1623 tcggaccacgtcttgttttcctttttcaatagctcagtggtttcatctttgatcttagca 1682
Query: 388 attaaccctggtcccttgtaagcgtatgcggtatatagttcgaccattgaagcgcctgcc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1683 attaaccctggtcccttgtaagcgtatgcggtatatagttcgaccattgaagcgcctgcc 1742
Query: 448 tttgcaaactcaattgcgtctgcaccagaggaaatgccaccgcaaccgactaggactaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1743 tttgcaaactcaattgcgtctgcaccagaggaaatgccaccgcaaccgactaggactaga 1802
Query: 508 cctgagcccttggtgtatttcgccatggtcttaagagctttcaatgctaatggctttagt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1803 cctgagcccttggtgtatttcgccatggtcttaagagctttcaatgctaatggctttagt 1862
Query: 568 ggtttaccacttaacccaccagcttgggaaacaaggtcactgtcctctgttatcaatgta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1863 ggtttaccacttaacccaccagcttgggaaacaaggtcactgtcctctgttatcaatgta 1922
Query: 628 gtaggtctttggatcgttgtgtttgaaatgatgataccatcgactttggatttcttggca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1923 gtaggtctttggatcgttgtgtttgaaatgatgataccatcgactttggatttcttggca 1982
Query: 688 gcttcagcaatagatttgatctcttcttctactaaatctggggcaactttaaccaataca 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1983 gcttcagcaatagatttgatctcttcttctactaaatctggggcaactttaaccaataca 2042
Query: 748 nggaggtttgtgtgtcttagcacctaatgcattaccagatgtaaccaatgagtctctctt 807
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2043 -ggaggtttgtgtgtcttagcacctaatgcattaccagatgtaaccaatgagtctctctt 2101
Query: 808 ggc-acgacttgngtcaatagatcagtaaggatggattctttnntgtaacttctcaaacc 866
||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2102 ggcaacgacttgggtcaatagatcagtaaggatggattctttttgtaaacttctcaaacc 2161
Query: 867 c-gggtatttggagaaga-acattaattactagaacatctgcgtacttttgaaagc-ttc 923
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2162 cggggtatttggagaagacacattaattactagaacatctgcgtacttttgaaagctttc 2221
Query: 924 tacacctttcaaataatc-tgcacttcatcaccgg 957
|||||||||||||||||| ||||||||||||||||
Sbjct: 2222 tacacctttcaaataatcttgcacttcatcaccgg 2256
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7014
Number of Sequences: 1807
Number of extensions: 7014
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)