BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF02RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1616 0.0
>3x_Contig1730
Length = 17223
Score = 1616 bits (815), Expect = 0.0
Identities = 889/909 (97%), Gaps = 5/909 (0%)
Strand = Plus / Minus
Query: 50 ccagttcca-catctgatccagatccaccgtctgtgttcacacctggcaatccttgtgat 108
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2660 ccagttccaacatctgatccagatccaccgtctgtgttcacacctggcaatccttgtgat 2601
Query: 109 atatctggaacaaccaagataggttttgcatcgggatttgctcttggattatcagtgtat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2600 atatctggaacaaccaagataggttttgcatcgggatttgctcttggattatcagtgtat 2541
Query: 169 aaacagtcaacatctgtcaataaaaatagataatcagcaccagtcaacgctgctgtgata 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2540 aaacagtcaacatctgtcaataaaaatagataatcagcaccagtcaacgctgctgtgata 2481
Query: 229 gctgataatgtatcattatcaccaaatttgatttcgctcacagataaagtgtcattctca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2480 gctgataatgtatcattatcaccaaatttgatttcgctcacagataaagtgtcattctca 2421
Query: 289 ttaacgattggcactactcccatggaaagtaattcactaatagtattctgtgcattctta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2420 ttaacgattggcactactcccatggaaagtaattcactaatagtattctgtgcattctta 2361
Query: 349 tactgagtccaatcaacaatgtcatttcgagtaattaggatttgagcaattctctgatca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 tactgagtccaatcaacaatgtcatttcgagtaattaggatttgagcaattctctgatca 2301
Query: 409 aattcagagaacaaggaatcccacctcccaattaatctgccttggcccacagctgcgatt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 aattcagagaacaaggaatcccacctcccaattaatctgccttggcccacagctgcgatt 2241
Query: 469 gcttgcaccttggatagtttctttggccttcccttcatattcatcgttttcaatccgacg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 gcttgcaccttggatagtttctttggccttcccttcatattcatcgttttcaatccgacg 2181
Query: 529 gcgatacctccactagatacaatgataactttgtgtcctcttctgcgtaactttaccaca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 gcgatacctccactagatacaatgataactttgtgtcctcttctgcgtaactttaccaca 2121
Query: 589 gtctccacaatcaatgacatgatagaaagttttggttctttggtctcttcatcaactagt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 gtctccacaatcaatgacatgatagaaagttttggttctttggtctcttcatcaactagt 2061
Query: 649 gatgaagatcccaattttatgactatgacgaactgctttaccatctgaacttgttggaaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 gatgaagatcccaattttatgactatgacgaactgctttaccatctgaacttgttggaaa 2001
Query: 709 acgttcttcttctcgcggtccgtagaaacctttggttacagaaatttcaggccagattga 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 acgttcttcttctcgcggtccgtagaaacctttggttacagaaatttcaggccagattga 1941
Query: 769 ctaatagctgctgctcacagacagtacactatngttatatctgttntgcagatgcagtta 828
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 1940 ctaatagctgctgctcacagacagtacactatgtttatatctgttttgcagatgcagtta 1881
Query: 829 ttcatcttttc-aatggtctgcagatgtcattcgaacatttactttcagtttcttgtg-a 886
||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct: 1880 ttcatcttttcaaatggtctgcagatgtcatcgaaacatttactttcagtttc-tgtgaa 1822
Query: 887 ttnnttaatattcaccgggtcttc-aaatattagtaactatcattactagnaacactgga 945
|| | |||||||||||| ||||| |||||| |||||||||||||||| |||||||||
Sbjct: 1821 tttttaaatattcaccggttcttcaaaatataggtaactatcattactaagaacactgga 1762
Query: 946 aacanacga 954
|||| ||||
Sbjct: 1761 aacagacga 1753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6893
Number of Sequences: 1807
Number of extensions: 6893
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)