BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF03FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1639 0.0
>3x_Contig1502
Length = 14970
Score = 1639 bits (827), Expect = 0.0
Identities = 867/878 (98%), Gaps = 2/878 (0%)
Strand = Plus / Plus
Query: 88 gtgaaaaaccaggacaagtcaatgctcgagaagttaatcaaaccagctaaacaggctttg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11663 gtgaaaaaccaggacaagtcaatgctcgagaagttaatcaaaccagctaaacaggctttg 11722
Query: 148 ttaatgactggtaaacaaggggaagatttagctgctttcaaattgccaaagggaccaagt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11723 ttaatgactggtaaacaaggggaagatttagctgctttcaaattgccaaagggaccaagt 11782
Query: 208 tgtgttttaccaatatttttacatggtttaatgtatggttctggtgacgaacgtgaggct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11783 tgtgttttaccaatatttttacatggtttaatgtatggttctggtgacgaacgtgaggct 11842
Query: 268 tcagcccttgccattgcggatattgtctccaagactcctgcagcaggcttgaaatcctat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11843 tcagcccttgccattgcggatattgtctccaagactcctgcagcaggcttgaaatcctat 11902
Query: 328 gttacagttatcactggtcctttgattcgtgttgttggagaaagattcaatagtgacatc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903 gttacagttatcactggtcctttgattcgtgttgttggagaaagattcaatagtgacatc 11962
Query: 388 aaggcagctatcctttatgctttgaatatcctatttgcgaaaattcctcagttgttgaga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11963 aaggcagctatcctttatgctttgaatatcctatttgcgaaaattcctcagttgttgaga 12022
Query: 448 cctttcattcctcagttgcaaagaacgtttgtcaaatctttgtccgatccaactaatgag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12023 cctttcattcctcagttgcaaagaacgtttgtcaaatctttgtccgatccaactaatgag 12082
Query: 508 gtattacgtcttcgtgctgccaaggcattaggaaccttaattgaataccagcctagagtt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12083 gtattacgtcttcgtgctgccaaggcattaggaaccttaattgaataccagcctagagtt 12142
Query: 568 gatccattggttgtcgaactggtaacaggtgctaagcaaagtgatgatgatggtgttaag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12143 gatccattggttgtcgaactggtaacaggtgctaagcaaagtgatgatgatggtgttaag 12202
Query: 628 actgctatgttgaaggctttattggaagccgtatcaaaggcaggttccaaattgaaccaa 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12203 actgctatgttgaaggctttattggaagccgtatcaaaggcaggttccaaattgaaccaa 12262
Query: 688 acctcaaaaaccaatatcttaaatttgatcgaagaagaaatgttatctgcaaatgataag 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12263 acctcaaaaaccaatatcttaaatttgatcgaagaagaaatgttatctgcaaatgataag 12322
Query: 748 ctcgcagtggcctacgcgaaattaatcggatccttatcaagtatcttatcaaccngagaa 807
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12323 ctcgcagtggcctacgcgaaattaatcggatccttatcaagtatcttatcaaccgaggaa 12382
Query: 808 gctgcaacaatattgaaaaagcaggtgttagaaagctccttgactgaagattctggtaaa 867
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 12383 gctgcaacaatattgaaaagcaaggtgttagaaagctccttgactgaagattctggtaaa 12442
Query: 868 ttcggtattttgacccttaaactcattcttgaaaga-gctccatcacatgtttttggcac 926
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12443 ttcggtattttgaccc-taaactcattcttgaaagatgctccatcacatgtttttggcac 12501
Query: 927 tggactaattgatgaaagtgtttactacataaatgatg 964
|||||||||||||||| ||||| ||||||||| |||||
Sbjct: 12502 tggactaattgatgaatgtgttaactacataattgatg 12539
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6982
Number of Sequences: 1807
Number of extensions: 6982
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)