BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF03RM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig610 1524 0.0
>3x_Contig610
Length = 2250
Score = 1524 bits (769), Expect = 0.0
Identities = 813/828 (98%)
Strand = Plus / Minus
Query: 44 gctttctggcagagtttaatatcgtgacatcagccagactacatcaaggttcgggagaag 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 906 gctttctggcagagtttaatatcgagacatcagccagactacatcaaggttcgggagaag 847
Query: 104 ttgctcacaccgaataaaactaaacatatacctataagagtgtggactgcagatgcatca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ttgctcacaccgaataaaactaaacatatacctataagagtgtggactgcagatgcatca 787
Query: 164 ttcctacaaccttcaatacccgctaattccgacactatgacgctgtttgatgttattact 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 786 ttcctacaaccttcaatacccgctaattccgacactatgacgctgtttgatgttatgact 727
Query: 224 tcaatggacattaagcttcaggaaaataacagagcaattatacaaggcatagtgatctgt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tcaatggacattaagcttcaggaaaataacagagcaattatacaaggcatagtgatctgt 667
Query: 284 tcggatgaggacattattaatttatatgatttatttgcaagcattgacggatttttatat 343
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 666 tcggatgaggacattattaatttatatgatttaattgcaagcattgacggatttttatat 607
Query: 344 gtagtcatcaaataataagcttcagcgtatatatacagtaaaatagatattgaaagttcg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gtagtcatcaaataataagcttcagcgtatatatacagtaaaatagatattgaaagttcg 547
Query: 404 gagagtttcattagtcaattgacttactcagttgaaacatcattagggacttcaaaaact 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gagagtttcattagtcaattgacttactcagttgaaacatcattagggacttcaaaaact 487
Query: 464 gcctgtaaccatacacgatacatctttagttgtcttttacgattgaccaatagtcttctg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gcctgtaaccatacacgatacatctttagttgtcttttacgattgaccaatagtcttctg 427
Query: 524 tctgttccaatctgtttctcaacgaaatatttttcagtgaagatgtcgcgcagttcttgt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tctgttccaatctgtttctcaacgaaatatttttcagtgaagatgtcgcgcagttcttgt 367
Query: 584 tcagtgaagaaatacactcttgttccatctcctctaacgtagaaattatcatccagtagt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tcagtgaagaaatacactcttgttccatctcctctaacgtagaaattatcatccagtagt 307
Query: 644 ctattctttttgaaccgtacctgagctagatcataacgtccataatcacggaacagtatc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctattctttttgaaccgtacctgagctagatcataacgtccataatcacggaacagtatc 247
Query: 704 ttaccacctggctttaggattttatgaaggttatccattgccttactccattgttcangt 763
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 246 ttaccacctggctttaggattttctgaaggttatccattgccttactccattgttcaggt 187
Query: 764 gatagtgcactaaacacgaagatcataacagcaatatcgacagaatttggctctatcccg 823
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 186 gatagtgcactaaacacgaagatcatcacagcaatatcgacagaatttggctctatcccg 127
Query: 824 tcccggtattctcctttcatatttgcaagatcccacactgttgcgtgt 871
||| | ||||||||| || ||||| ||||||| | |||||||||||
Sbjct: 126 tccggtaattctccttcaatctttgccagatccccctctgttgcgtgt 79
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6689
Number of Sequences: 1807
Number of extensions: 6689
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)