BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC22ZF04FM1.SCF screened BAC_end
         (953 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1224                                                        1586   0.0  

>3x_Contig1224 
          Length = 5948

 Score = 1586 bits (800), Expect = 0.0
 Identities = 856/871 (98%), Gaps = 4/871 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   tgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 tgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 3953

                                                                        
Query: 146  ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 4013

                                                                        
Query: 206  attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 4073

                                                                        
Query: 266  aatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgatttt 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 aatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgatttt 4133

                                                                        
Query: 326  ggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataaa 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 ggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataaa 4193

                                                                        
Query: 386  tgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcga 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 tgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcga 4253

                                                                        
Query: 446  caaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatct 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 caaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatct 4313

                                                                        
Query: 506  tgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataat 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 tgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataat 4373

                                                                        
Query: 566  cgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaac 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4374 cgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaac 4433

                                                                        
Query: 626  gaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggttttag 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4434 gaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggttttag 4493

                                                                        
Query: 686  gtttataacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatggaaatt 745
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4494 gtttatcacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatggaaatt 4553

                                                                        
Query: 746  cgtgatcaaatggtaccaagtacgtgattcaatataggttttccgtaaggattntgacca 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4554 cgtgatcaaatggtaccaagtacgtgattcaatataggttttccgtaaggattttgacca 4613

                                                                        
Query: 806  tttcatctgtgtgaacttagaatatttcatatcccccgcgtagatc-gcatagttggtac 864
            ||  ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||
Sbjct: 4614 ttcaatctgtgtgaacttagaatatttcatatcccgcg-gtagatcggcatagttggtac 4672

                                                                        
Query: 865  catctttcaattt-aactggttaatggtnttttatgaccagnaacattgatt-atatcgn 922
            ||||||||||||| |||||||||||||| ||| |||||||| |||||||||| |||||| 
Sbjct: 4673 catctttcaatttaaactggttaatggtttttaatgaccagaaacattgattaatatcgt 4732

                                           
Query: 923  cgnatcctataatatgggaatggtcggtact 953
            || ||||||||||||||||||||||| ||||
Sbjct: 4733 cgtatcctataatatgggaatggtcgttact 4763


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6684
Number of Sequences: 1807
Number of extensions: 6684
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)