BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF04RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig655 1279 0.0
>3x_Contig655
Length = 2459
Score = 1279 bits (645), Expect = 0.0
Identities = 648/649 (99%)
Strand = Plus / Minus
Query: 50 tggaccaaatggtgcatctggaatgaacacattaatgacacattatctagaagttgaaaa 109
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tggaccaaatggtgcagctggaatgaacacattaatgacacattatctagaagttgaaaa 594
Query: 110 agatagccattccgctgtggatttatattcttggagaaagaagtggcaaatacctcccaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agatagccattccgctgtggatttatattcttggagaaagaagtggcaaatacctcccaa 534
Query: 170 tgaatacactgaaacaaatttgttcaaagggttggcaaggttgccagaaccaatttctgt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgaatacactgaaacaaatttgttcaaagggttggcaaggttgccagaaccaatttctgt 474
Query: 230 caaagttgcagaacgagtggtgaagatagttttaaaattggttgaagatgaaagactcaa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 caaagttgcagaacgagtggtgaagatagttttaaaattggttgaagatgaaagactcaa 414
Query: 290 taatataaattttaacgctgcattaagtgcgttggcgaactctaacgaccctagttacct 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 taatataaattttaacgctgcattaagtgcgttggcgaactctaacgaccctagttacct 354
Query: 350 gttcaaatgttttgatttgagacccaaaggtataaaaaaagatgcaattgcgtacacgca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gttcaaatgttttgatttgagacccaaaggtataaaaaaagatgcaattgcgtacacgca 294
Query: 410 actacttattggatgtgcgaagattacagatgcagtggaagccattcaaagggctgatga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 actacttattggatgtgcgaagattacagatgcagtggaagccattcaaagggctgatga 234
Query: 470 tataatgaactctgctgaccccaaagttatcgattcacaaatgttttttcattatttgaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tataatgaactctgctgaccccaaagttatcgattcacaaatgttttttcattatttgaa 174
Query: 530 cgtttggcactctagaagggatctacgattttccaattgtgtgttgcctctgcttgatat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 cgtttggcactctagaagggatctacgattttccaattgtgtgttgcctctgcttgatat 114
Query: 590 attctatgattttaaggtcccaaatgttcgtttcaagaaagaaataccagaatttgtcaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 attctatgattttaaggtcccaaatgttcgtttcaagaaagaaataccagaatttgtcaa 54
Query: 650 gttgcctgctttgaagaattggaatatcaaatctaaaatgcgtttgact 698
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 gttgcctgctttgaagaattggaatatcaaatctaaaatgcgtttgact 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8348
Number of Sequences: 1807
Number of extensions: 8348
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)