BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF05FM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1159 1007 0.0
>3x_Contig1159
Length = 4873
Score = 1007 bits (508), Expect = 0.0
Identities = 633/672 (94%), Gaps = 2/672 (0%)
Strand = Plus / Minus
Query: 97 tttgatgaactctacttcacctcgtgtgaaatgtcaagctactttggccttgagaaactt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 tttgatgaactctacttcacctcgtgtgaaatgtcaagctactttggccttgagaaactt 1407
Query: 157 agcttcagataccaactactttttggagattgttagagctggtggattaccagacttggt 216
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 agcttcagataccaactaccaattggagattgttagagctggtggattaccagacttggt 1347
Query: 217 tcattggatactttcggattctttaccattagtcttggccagcgtcgcatgtatcagaaa 276
||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1346 tcaattgattcagtcggattctttaccattagtcttggccagcgtcgcatgtatcagaaa 1287
Query: 277 tatttccatccatccattaaacgaaggtctaattgtagatgccggatttctaccaccttt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 tatttccatccatccattaaacgaaggtctaattgtagatgccggatttctaccaccttt 1227
Query: 337 agtaaaattgcttgattaccaagaatcagaagaaattcaatgtcatgctgtttcaacttt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 agtaaaattgcttgattaccaagaatcagaagaaattcaatgtcatgctgtttcaacttt 1167
Query: 397 aagaaacttggctgcttcatctgaaaaaaatagagcagagttcttccaatctggtgtaat 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 aagaaacttggctgcttcatctgaaaaaaatagagcagagttcttccaatctggtgtaat 1107
Query: 457 tgaaaaattcaagcaacttgccttgacatgtcccatcagcgttcaaagtgaaattagtgc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 tgaaaaattcaagcaacttgccttgacatgtcccatcagcgttcaaagtgaaattagtgc 1047
Query: 517 ttgctttgctatcttggcactttcagattatactaaatatgatcttttgcaacaagacgt 576
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1046 ttgctttgctatcttggcactttcagataatactaaatatgatcttttgcaacaagacgt 987
Query: 577 actataagttgtgatctctatgacaatggcccatgaccaagagatctttggtaactttgc 636
|||| ||||| ||||| | ||||||||| |||| ||||||||||||| |||||||| |||
Sbjct: 986 actaaaagttttgatcccaatgacaatgtcccaggaccaagagatctctggtaactctgc 927
Query: 637 tgttgctggagcatacttgatctttatggtcagcattttataaaaaatattgggttactg 696
|| ||||| |||| ||||||||| || |||||||| |||| | |||||||||| |||||
Sbjct: 926 tgctgctgtagcaaacttgatctctagggtcagcaatttagagaaaatattggagtactg 867
Query: 697 gggtcaacccaaccatggtataaggggttttctggacagattcttggtctaggga-ttcc 755
||||||||| ||| ||||||| | |||||| || ||||||||| |||||| || ||||
Sbjct: 866 gggtcaaccaaacgatggtatcaagggtttcttgatcagattctt-gtctagtgacttcc 808
Query: 756 cttcctatgaac 767
|| |||||||||
Sbjct: 807 ctacctatgaac 796
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7526
Number of Sequences: 1807
Number of extensions: 7526
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)