BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF07FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1412 1556 0.0
>3x_Contig1412
Length = 7639
Score = 1556 bits (785), Expect = 0.0
Identities = 841/856 (98%), Gaps = 4/856 (0%)
Strand = Plus / Minus
Query: 86 cgaaatcatcctttagttccttaacaaggttgacataacgattgtattcttcttcattca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4519 cgaaatcatcctttagttccttaacaaggttgacataacgattgtattcttcttcattca 4460
Query: 146 tgccactattgtacgtttcatcggtagttatcgactcatatgcatatactacaaaagaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4459 tgccactattgtacgtttcatcggtagttatcgactcatatgcatatactacaaaagaat 4400
Query: 206 gtagttctctgacgttagtataccagaaagcaccatgttcaatcataacatcgggcttta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4399 gtagttctctgacgttagtataccagaaagcaccatgttcaatcataacatcgggcttta 4340
Query: 266 aattagagattatcttttgtatggcatctaaaacttcagctaagaaagtttcactttgcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4339 aattagagattatcttttgtatggcatctaaaacttcagctaagaaagtttcactttgcg 4280
Query: 326 aggttaaacccaatctccacatatcacttagaataataataagaacccttgatggataca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4279 aggttaaacccaatctccacatatcacttagaataataataagaacccttgatggataca 4220
Query: 386 aaacttcttttcttgtcaagttcacagagacaccagttggaggaactttgccacccttca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4219 aaacttcttttcttgtcaagttcacagagacaccagttggaggaactttgccacccttca 4160
Query: 446 agagtccctcgatgatttcagtattgagggatctcgaatcttcgaacattttgtatagct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4159 agagtccctcgatgatttcagtattgagggatctcgaatcttcgaacattttgtatagct 4100
Query: 506 catcattaatttgagacattaacgctgaaacatcttcagtattgaagttattgtttatgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4099 catcattaatttgagacattaacgctgaaacatcttcagtattgaagttattgtttatgg 4040
Query: 566 aaacaacattcaattgttttggagaagagccatcattcaaagtactatttgccgagaagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4039 aaacaacattcaattgttttggagaagagccatcattcaaagtactatttgccgagaagc 3980
Query: 626 gcctgttttttaccggagtagcgttgatgcctcctcctacatatacaccagagcgcatan 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3979 gcctgttttttaccggagtagcgttgatgcctcctcctacatatacaccagagcgcata- 3921
Query: 686 gaggactgt-aacgtgcaacttcctcctttaaagaaaaaacttcttttnttagatcggcg 744
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3920 gaggactgtaaacgtgcaacttcctcctttaaagaaaaaacttctttttttagatcggcg 3861
Query: 745 ttttctgattgagatgttagaagctcatctctcgcggatgttaattctttcaaaagtgga 804
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 3860 ttttctgattgagatgttagaagctcatctctcgcggatgttaattc-ttccaaagtgga 3802
Query: 805 tgc-atntcatctttcaagttcttctgcttgttgaggaagtcgtcaacttctgcctttgc 863
||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 3801 tgcaatttcatctttcaagttcttctgcttgttgagaagttcgtcaacttctgcctttgc 3742
Query: 864 agagatgattncttcttttgcagcaatcaattggncgttaacctttccggattctttttc 923
|||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct: 3741 agagatgatttcttcttttgcagcaatcaattggtcgttaacctttccgtattcttcttc 3682
Query: 924 gngtatactcttttgg 939
| ||||||||||||||
Sbjct: 3681 gtgtatactcttttgg 3666
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7274
Number of Sequences: 1807
Number of extensions: 7274
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)