BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF07RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig116 1144 0.0
3x_Contig389 541 e-154
>3x_Contig116
Length = 920
Score = 1144 bits (577), Expect = 0.0
Identities = 583/585 (99%)
Strand = Plus / Plus
Query: 44 gctttatgtgaaaacgatatgtctttattcatagagatggatatcacctacagtttgcca 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 336 gctttatgtgaaaacgatatgtcgttattcatagagatggatatcacctacagtttgcca 395
Query: 104 attggaacaaggagattaatgaaggctcgttagaacaatgtatgtgttgatagaatctca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 attggaacaaggagattaatgaaggctcgttagaacaatgtatgtgttgatagaatctca 455
Query: 164 actttgtttagaattttcaatttttttaagaacttttgaacggctgatatgaccctatga 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 actttgtttagaattttcaatttttttaagaacttttgaacggctgatatgaccctatga 515
Query: 224 tcaccgatttatgcccatactatgtaaatatggaacgcttaacatcgactgctgttgaat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcaccgatttatgcccatactatgtaaatatggaacgcttaacatcgactgctgttgaat 575
Query: 284 ataccacaatcaaacaactgaatatccaattgaattatgggctggtcttgaaactgaagt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ataccacaatcaaacaactgaatatccaattgaattatgggctggtcttgaaactgaagt 635
Query: 344 tgactttgaattcaatatgaatctccaattccagatcactttccctgttagtcaatgcta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgactttgaattcaatatgaatctccaattccagatcactttccctgttagtcaatgcta 695
Query: 404 taaagcgtatgtaattgaaaggcaaaaaatgagaatacaaacattttgagctgatcataa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 taaagcgtatgtaattgaaaggcaaaaaatgagaatacaaacattttgagctgatcataa 755
Query: 464 ggaccttctacaatataataaagagtaaagggttattaaactcacaagagctgcacctgt 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 agaccttctacaatataataaagagtaaagggttattaaactcacaagagctgcacctgt 815
Query: 524 tgtagttattccctatgaacatagcaaaagtcacagcaatgcataggttactcctgcgga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tgtagttattccctatgaacatagcaaaagtcacagcaatgcataggttactcctgcgga 875
Query: 584 gctattcgaacgcctcatccaagacttcgaagactcttttccaat 628
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gctattcgaacgcctcatccaagacttcgaagactcttttccaat 920
>3x_Contig389
Length = 2629
Score = 541 bits (273), Expect = e-154
Identities = 336/351 (95%), Gaps = 5/351 (1%)
Strand = Plus / Plus
Query: 611 cgaagactcttttccaatggttcccc-aagacttttacttcggggaaaccacaatgggaa 669
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 cgaagactcttttccaattgttcccccaagacttttacttcggggaaaccacaatgggaa 60
Query: 670 gttgatttgaaaaagcttanganagaatatcgtcagttgcaatctgagcacca-ccccga 728
||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct: 61 gttgatttgaaaaagcttaggaaagaatatcgtcagttgcaatctgagcaccacccccga 120
Query: 729 tgtaattacttctactgtggataatgtatccctcggagttgaatagggcttataagactc 788
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 121 tgtaattacttctactgtggataatgtat-cctcggagttgaatagggcttataagactc 179
Query: 789 tcagtaaaccattgccacgttctcagtacattttaagttttgcacggaatagatttgact 848
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 180 tcagtaaaccattgccacgttctcagtacattttaag-tttgcacggaatagatttgact 238
Query: 849 tcagatggcgaagccccaaaagtgatgtcgaaagatccacaactgttgatgttagttttg 908
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 239 caagatggcgaagcccaaaaagtgatgtcgaaggatccacaactgttgatgttagttttg 298
Query: 909 gatgttcatgaccagcttggagac-tttatagcgaggaagatttgaaacaa 958
||||||||||| ||||||| |||| || |||||||||||||||||||||||
Sbjct: 299 gatgttcatgagcagcttgaagacattaatagcgaggaagatttgaaacaa 349
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7298
Number of Sequences: 1807
Number of extensions: 7298
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 2
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)