BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC22ZF08FM1.SCF screened BAC_end (974 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1154 944 0.0 >3x_Contig1154 Length = 6277 Score = 944 bits (476), Expect = 0.0 Identities = 525/538 (97%), Gaps = 4/538 (0%) Strand = Plus / Plus Query: 436 actccgagactctggcattcagatcagaaacggacggctattcagccgatactagtgaag 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 actccgagactctggcattcagatcagaaacggacggctattcagccgatactagtgaag 77 Query: 496 ctgctaactgcgatgaatgcatacaggattttgaatcttttgaccctgttgaagagtgcg 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 ctgctaactgcgatgaatgcatacaggattttgaatcttttgaccctgttgaagagtgcg 137 Query: 556 cgaagctacgacaacgtcaacctgatggcgtccccttcattaaaggtcctgaaatctggg 615 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 cgaag-tacgacaacgtcaacctgatggcgtccccttcattaaaggtcctgaaatctggg 196 Query: 616 aaaaaagaagacagctttggctgaaagtgacgcccgaaaacactttggctcactcagaga 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 aaaaaagaagacagctttggctgaaagtgacgcccgaaaacactttggctcactcagaga 256 Query: 676 agtcaagagcaatgttttcagatatcagcccanagaaatatgggcctatctataaacgtt 735 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 257 agtcaagagcaatgttttcagatatcagcccaaagaaatatgggcctatctataaacgtt 316 Query: 736 tggttatggaagacgcacatctaaggaaaaacctanaccttcaagatgtcattaaagtta 795 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 317 tggttatggaagacgcacatctaaggaaaaacctaaaccttcaagatgtcattaaagtta 376 Query: 796 tagacgctggttgggtggaaacatc-aaatgggaccgtgctgcccaaggcgctgcatgaa 854 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 377 tagacgctggttgggtggaaacatcaaaatgggaccgtgctgcccaaggcgctgcatgaa 436 Query: 855 aagaattnacagcgtatgcacattagcgacgctaacttaccattattagnncatacaaac 914 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 437 aagaattaacagcgtatgcacattagcgacgctaacttaccattattagcaataacaaac 496 Query: 915 atgccctacagctttcaaaactgatnaaaaggatgaanatgtgttatgctactttttt 972 ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 497 atg-cctacagctttcaaaactgataaaaaggatgaa-atgtgttatgctactttttt 552 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4881 Number of Sequences: 1807 Number of extensions: 4881 Number of successful extensions: 37 Number of sequences better than 1.0e-20: 1 length of query: 974 length of database: 10,358,551 effective HSP length: 16 effective length of query: 958 effective length of database: 10,329,639 effective search space: 9895794162 effective search space used: 9895794162 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)