BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF08RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1461 0.0
>3x_Contig1652
Length = 14842
Score = 1461 bits (737), Expect = 0.0
Identities = 845/872 (96%), Gaps = 7/872 (0%)
Strand = Plus / Minus
Query: 45 ctttaatttctt-acaatttctactcttgcatcgatctcctctacaataccagtcgcagc 103
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11938 ctttaatttcttcacaatttctacgcttgcatcgatctcctctacaataccagtcgcagc 11879
Query: 104 tattctgaaacttccagttgtatcactgttagcaactatttgaacaccacagaaagtggt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11878 tattctgaaacttccagttgtatcactgttagcaactatttgaacaccacagaaagtggt 11819
Query: 164 atttggcgagcacaagggaccatagaaagaagctgtacaataagcatgttctggagtata 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11818 atttggcgagcacaagggaccatagaaagaagctgtacaataagcatgttctggagtata 11759
Query: 224 cttcaacattctagtcctggttctagagtcactagtggtgtatattggtagagtttggaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11758 cttcaacattctagtcctggttctagagtcactagtggtgtatattggtagagtttggaa 11699
Query: 284 acgtctccaaccaagagataaaactaaaggatcatttgtcttgagaatctttttgtgcca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11698 acgtctccaaccaagagataaaactaaaggatcatttgtcttgagaatctttttgtgcca 11639
Query: 344 acgatgtcttctgactcttgcattaataattccgaacttcaattctgtgggaagaagacc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11638 acgatgtcttctgactcttgcattaataattccgaacttcaattctgtgggaagaagacc 11579
Query: 404 tcccataattactggatactttgggttgaaattttcgatgaattccataggaaccttatc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11578 tcccataattactggatactttgggttgaaattttcgatgaattccataggaaccttatc 11519
Query: 464 gaagacaatacgaacataagacccagctttcataccttcgatttgttgcctttgttcagg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11518 gaagacaatacgaacataagacccagctttcataccttcgatttgttgcctttgttcagg 11459
Query: 524 agtcatagattccagttcggctttattgatttctaattgtttagcaatcttagccttctg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11458 agtcatagattccagttcggctttattgatttctaattgtttagcaatcttagccttctg 11399
Query: 584 taattcgtaccaggtatcgtattcattttcagggtcttctccaaagttgtctccttcttc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11398 taattcgtaccaggtatcgtattcattttcagggtcttctccaaagttgtctccttcttc 11339
Query: 644 catttcgaattgtaaccttaatttctctttttttgcggcattcaattcacgctcttcatc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11338 catttcgaattgtaaccttaatttctctttttttgcggcattcaattcacgctcttcatc 11279
Query: 704 ctgngtcaaatcctttttttcttcttcttcgaaattagcgaacgattcgttgctatcaga 763
||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 11278 ctgggtcaaatccttcttttcttcttcttcgaaatcagcgaacgattcgttgctatcaga 11219
Query: 764 ttctt-atcttctgcagcagaattcttctccttttcatctgtgttttcaagctcagcttt 822
||||| |||| ||||||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct: 11218 ttcttcatctcctgcagcagaattctcctccttctcatctgtgttttcaggctcagcttc 11159
Query: 823 ctagttcttaaaat-acccgaaacttaatctt-atcatggtcttcattctttacat-aac 879
||| || ||||| ||| | |||| ||||| ||||| |||||||| |||||||| | |
Sbjct: 11158 taagtcctcaaaatcaccgtatacttcatcttcatcatcgtcttcatcctttacatcatc 11099
Query: 880 agaagactt-gtgttt-aggatggctttccaa 909
||||||||| |||||| |||||||||||||||
Sbjct: 11098 agaagacttggtgtttaaggatggctttccaa 11067
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9272
Number of Sequences: 1807
Number of extensions: 9272
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)