BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF09FM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 1526 0.0
>3x_Contig1742
Length = 17167
Score = 1526 bits (770), Expect = 0.0
Identities = 858/878 (97%), Gaps = 8/878 (0%)
Strand = Plus / Minus
Query: 89 ccgaaaccaactcatcgtgttcgttaattaatttgtttaaatgctgatcattttctagca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11074 ccgaaaccaactcatcgtgttcgttaattaatttgtttaaatgctgatcattttctagca 11015
Query: 149 acttggaatattgatctttggataaaggtgacgtgacttctggaagcttgtctcgtccta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11014 acttggaatattgatctttggataaaggtgacgtgacttctggaagcttgtctcgtccta 10955
Query: 209 gcgttttaaattcctccaatgatgttgtctcgtttagaagctgtctcaacaatgcaatct 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10954 gcgttttaaattcctccaatgatgttgtctcgtttagaagctgtctcaacaatgcaatct 10895
Query: 269 tatctacgccaggtagatttaacttatcaacaatgctttgaacgtattgaacagcatgtt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10894 tatctacgccaggtagatttaacttatcaacaatgctttgaacgtattgaacagcatgtt 10835
Query: 329 tctttgaacaatatttgcttcttgaattggcatcacactctgtatagcattcagggagcc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10834 tctttgaacaatatttgcttcttgaattggcatcacactctgtatagcattcagggagcc 10775
Query: 389 tgcatttcctcttccaaagagttttcggtagtttgccgccatttatcaatgccggtcctg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10774 tgcatttcctcttccaaagagttttcggtagtttgccgccatttatcaatgccggtcctg 10715
Query: 449 taattccagcactacaatacgaacagtagaatgaaaaaacgagatctctatatttctcgg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10714 taattccagcactacaatacgaacagtagaatgaaaaaacgagatctctatatttctcgg 10655
Query: 509 ggatctttaaacaggaaaaatgaaaccaatcatcacatccatcacatcctaccatcaact 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10654 ggatctttaaacaggaaaaatgaaaccaatcatcacatccatcacatcctaccatcaact 10595
Query: 569 ccccagtgtctggtttcttacatatacaataaacttcttccccagtttttgggtcgtgtt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10594 ccccagtgtctggtttcttacatatacaataaacttcttccccagtttttgggtcgtgtt 10535
Query: 629 tcctgctgtcatacctggggcaccaactaggtaatgacatcgtgaatactgtaaattcaa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10534 tcctgctgtcatacctggggcaccaactaggtaatgacatcgtgaatactgtaaattcaa 10475
Query: 689 tcctatactggagttatcttatgatgataaatatctaggcagaaaaaatgaagtatattc 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10474 tcctatactggagttatcttatgatgataaatatctaggcagaaaaaatgaagtatattc 10415
Query: 749 tttgtaatattcaaatgcaaccattcatgtacccttcacnaggccata-ttgngntattt 807
||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||
Sbjct: 10414 tttgtaatattcaaatgcaaccattcatgtacccttcac-aggccatatttgtgttattt 10356
Query: 808 ctctggttattttaccttcatcgattcgtgtaatggggttttacattntaatattcc-tt 866
||||| |||||||||||||||||||||||||||| || ||||||||| ||||||||| ||
Sbjct: 10355 ctctgtttattttaccttcatcgattcgtgtaat-ggtttttacattttaatattccttt 10297
Query: 867 tctgatgcaatgtggtaagatggaaatgt-atgaattagcccacatctaattaagaaaca 925
|||||||||||||| ||||||| ||||| |||||| |||| ||||| ||||||||||||
Sbjct: 10296 tctgatgcaatgtgtaaagatgg-aatgtaatgaataagccaacatcaaattaagaaaca 10238
Query: 926 gatattccaanattcttcag-aatatcacttgcccttt 962
||||| |||| |||| |||| |||||||||||||||||
Sbjct: 10237 gatataccaagattc-tcagaaatatcacttgcccttt 10201
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7068
Number of Sequences: 1807
Number of extensions: 7068
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)