BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF09RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig714 1588 0.0
>3x_Contig714
Length = 3655
Score = 1588 bits (801), Expect = 0.0
Identities = 903/928 (97%), Gaps = 9/928 (0%)
Strand = Plus / Plus
Query: 44 gctttaggtgcagacgtaaaatatgtaccgttgtttcgcaaattccctgagtctattcct 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 gctttaggtgcagacgtaaaatatgtaccgttgtttcgcaaattccctgagtctattcct 2018
Query: 104 gacagaagtctgttggtagaggcagtctacgaaagtataggagatctgactcatttgctg 163
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2019 gacagaagtctgttggtagaggcagtctacgaaagtttaggagatctgactcatttgctg 2078
Query: 164 ttcttcaacttttatggatattggtcatcgtccgagtataatggatcatggtttggtaga 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2079 ttcttcaacttttatggatattggtcatcgtccgagtataatggatcatggtttggtaga 2138
Query: 224 cagtatcccgatttagagttacaggaggccattaagcgtcctgaattaatcactggcaaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2139 cagtatcccgatttagagttacaggaggccattaagcgtcctgaattaatcactggcaaa 2198
Query: 284 gaattgacgacattggatatagtcggccgaggagtggtcttagaacttttcgaaaacctc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2199 gaattgacgacattggatatagtcggccgaggagtggtcttagaacttttcgaaaacctc 2258
Query: 344 gctaattcgaagacttcaacttctgcctctgacaaagaattcatcaactcagtgatagcc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2259 gctaattcgaagacttcaacttctgcctctgacaaagaattcatcaactcagtgatagcc 2318
Query: 404 actgggaacgattggaaatcttctttaccagaagttattcctagcaaagaaaaccttgtg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2319 actgggaacgattggaaatcttctttaccagaagttattcctagcaaagaaaaccttgtg 2378
Query: 464 cacatcattggttgcgctgctacaaaatctggtccatttgatgaggaattacagaaattg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2379 cacatcattggttgcgctgctacaaaatctggtccatttgatgaggaattacagaaattg 2438
Query: 524 ttttccactcatatcaagactgctacagatgttttacgtcttgcagcttcgttctctgga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2439 ttttccactcatatcaagactgctacagatgttttacgtcttgcagcttcgttctctgga 2498
Query: 584 tcagatgtggctttgactaagcacacgcgcttcaaaatatcaaattctcaaagaaagttc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2499 tcagatgtggctttgactaagcacacgcgcttcaaaatatcaaattctcaaagaaagttc 2558
Query: 644 ttactgttcgcgttaaacaaattggatcgtgaaacggcaatggaggatatactgagattt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2559 ttactgttcgcgttaaacaaattggatcgtgaaacggcaatggaggatatactgagattt 2618
Query: 704 ttgggcctctggcttgtattagctaaatatttacatgtcaatgctatcgctagcagatat 763
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 2619 ttgggcctctggcttgtattagctaaatatttacatgtcaatgtta-cgctagcagatat 2677
Query: 764 ccaaacgcagccaaaatgatccaaacaattagangaaacccaaaatcgataaaaaccttt 823
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 2678 ccaaacgcagccaaaatgatccaaacaattagaggaaaccaaaaatcgataaaaaccttc 2737
Query: 824 catagaaaacattg-aacagcctttagagccagaaaggaccttaananntgaag--caca 880
|||||| | |||| ||||||||| ||||| |||||||||||||| | ||||| |||
Sbjct: 2738 aatagaaca-attgaaacagccttaagagcaagaaaggaccttaa-aaatgaaggcaaca 2795
Query: 881 tggaaagcagtttagaatc-attatacatatnttgaaaagcaggcctggtgacttttgct 939
||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||
Sbjct: 2796 tggaaagcagtttagaatcaattatacatattttgaaagcaaggcctggtgac-tttgct 2854
Query: 940 cgtc-gttagatcaccttctgcgttcat 966
|||| |||||||||||||||||||||||
Sbjct: 2855 cgtcggttagatcaccttctgcgttcat 2882
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6677
Number of Sequences: 1807
Number of extensions: 6677
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)