BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF10FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1629 0.0
>3x_Contig1738
Length = 21411
Score = 1629 bits (822), Expect = 0.0
Identities = 861/872 (98%), Gaps = 2/872 (0%)
Strand = Plus / Plus
Query: 87 gagagacgaagcctttagtatctggatagaatggagcaagcttttcccaaaaaacacacc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16945 gagagacgaagcctttagtatctggatagaatggagcaagcttttcccaaaaaacacacc 17004
Query: 147 agaaaatacgtttttgaggaaaatgcatagagattattacctagtttctattgtacacca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17005 agaaaatacgtttttgaggaaaatgcatagagattattacctagtttctattgtacacca 17064
Query: 207 tgatttcatcaaccctgacggattgtgggacttgctactgagttagcaatgtgtcctacg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17065 tgatttcatcaaccctgacggattgtgggacttgctactgagttagcaatgtgtcctacg 17124
Query: 267 aattacgtttcccattggcattcaaagtaggattttgtgaatctagttcattctgtaaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17125 aattacgtttcccattggcattcaaagtaggattttgtgaatctagttcattctgtaaat 17184
Query: 327 actcagtgactttctgtagtttaccgtcgttccattgctgtataagtccatacatcagtt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17185 actcagtgactttctgtagtttaccgtcgttccattgctgtataagtccatacatcagtt 17244
Query: 387 taaccgtactattattgaaagtaaacatgcccctattgaacttagcgccaggaaggatga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17245 taaccgtactattattgaaagtaaacatgcccctattgaacttagcgccaggaaggatga 17304
Query: 447 tcaatttggaacccaagaaacaggtcttaagagctggaattggatccaggttgattgcat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17305 tcaatttggaacccaagaaacaggtcttaagagctggaattggatccaggttgattgcat 17364
Query: 507 aaaatagattccccttcttatcttgtaagataagtttatatacatgttgattgagatttc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17365 aaaatagattccccttcttatcttgtaagataagtttatatacatgttgattgagatttc 17424
Query: 567 cagcatccttgttatttgtataattactatcaccattaccaactccagagttgttgtgat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17425 cagcatccttgttatttgtataattactatcaccattaccaactccagagttgttgtgat 17484
Query: 627 acgatgttgtaccatcgtcatcgtcatcatccaagttcacctccgaaatgagttgttgac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17485 acgatgttgtaccatcgtcatcgtcatcatccaagttcacctccgaaatgagttgttgac 17544
Query: 687 ggtcacgtgacgtacttagcctatccactttctgtcttcttgggtcaataaccacttgca 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17545 ggtcacgtgacgtacttagcctatccactttctgtcttcttgggtcaataaccacttgca 17604
Query: 747 attcgtccacctgcgtcaacttggaccgcgaaatattctctatcatgcacacttgggaat 806
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 17605 attcgtccacctgcgtcaacttggaccgcgaaatattctctatcatgcacactt-ggaat 17663
Query: 807 aacnnacgtctgtttaccgttatgagctttcgttgaaatatatctttggtgggccatgtt 866
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 17664 aacaacggtctgtttaccgttatgagcttccgttgaaatatatctttggtgggccatgtt 17723
Query: 867 tcattgttgaaagccttcacgatc-acgaattaggttcttcttaaacattggttacagtc 925
|||||||||||||||||||||||| |||||||||| |||||| |||||||||| ||||||
Sbjct: 17724 tcattgttgaaagccttcacgatcaacgaattagggtcttctaaaacattggtaacagtc 17783
Query: 926 gtaatgtcaacctttctgaggtccgaagtcat 957
||||||||||||||||||||||| ||||||||
Sbjct: 17784 gtaatgtcaacctttctgaggtcggaagtcat 17815
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6340
Number of Sequences: 1807
Number of extensions: 6340
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)