BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF10RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1479 1622 0.0
>3x_Contig1479
Length = 7316
Score = 1622 bits (818), Expect = 0.0
Identities = 884/904 (97%), Gaps = 2/904 (0%)
Strand = Plus / Plus
Query: 51 tgaaaaatcccttttctgaattggaatctgccacttggactttaccgttttgtggttgat 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3935 tgaaaaatcccttttctgaattggaatctgccacttggactttaccgttttgtggttgat 3994
Query: 111 tctgttgaaattgatactgtggttgttgttgacgattttgtgagaattgttgttgtgaag 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3995 tctgttgaaattgatactgtggttgttgttgacgattttgtgagaattgttgttgtgaag 4054
Query: 171 tatcattgtttggtgacttttgagctttctgttgcgttggttgtggttgttgagcgtaac 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4055 tatcattgtttggtgacttttgagctttctgttgcgttggttgtggttgttgagcgtaac 4114
Query: 231 gttgttggacttgctgcttgtaagcttcgtatgacatagggtccagcctttgttgtgtgt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4115 gttgttggacttgctgcttgtaagcttcgtatgacatagggtccagcctttgttgtgtgt 4174
Query: 291 gttgttgatattgttgttgagacatgatctgttgtggttgttgaggggcattgctaacac 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4175 gttgttgatattgttgttgagacatgatctgttgtggttgttgaggggcattgctaacac 4234
Query: 351 cttgagttaaatcggttccaccaggtaatggggaatgtgattgtaagggaacgtttgatc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4235 cttgagttaaatcggttccaccaggtaatggggaatgtgattgtaagggaacgtttgatc 4294
Query: 411 cgttcaaattgtttaccgctaatggaacttggttaaacttatttctatgtctcttactct 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4295 cgttcaaattgtttaccgctaatggaacttggttaaacttatttctatgtctcttactct 4354
Query: 471 tttcattcggaggagttgggtgaccatatccgtgcaagttaggtttcttgttaatggcca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4355 tttcattcggaggagttgggtgaccatatccgtgcaagttaggtttcttgttaatggcca 4414
Query: 531 gatcccaaccacgaccaccgtttaatttcatccaatcgtattctccgtccaatttctgtc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4415 gatcccaaccacgaccaccgtttaatttcatccaatcgtattctccgtccaatttctgtc 4474
Query: 591 ctaattcatccaatactgacaataatagtttacggtaaccttcataatccggagtctctt 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4475 ctaattcatccaatactgacaataatagtttacggtaaccttcataatccggagtctctt 4534
Query: 651 cgaaacccaagtttctttcaatttccaaataacgaccaaattgaactggtaacccttgtg 710
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4535 cgaaacccaagtttcttacaatttccaaataacgaccaaattgaactggtaacccttgtg 4594
Query: 711 antaatcgtacacgtttgttgatctctttttttcaccaatcttttcattattcaacttat 770
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4595 ataaatcgtacacgtttgttgatctctttttttcaccaatcttttcatatttcaacttat 4654
Query: 771 tattagctgctttttacccttgccatgtntattgacctctttagaaatag-aaaatacgt 829
|||||||||||||| |||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 4655 tattagctgcttttaacccttgccatggtaattgacctcttaggaaatagaaaaatacgt 4714
Query: 830 gtcccaatgctttcatatcggctcttctactttgttcacgacccagatgtgtgttgatag 889
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4715 gtcccaatgcttccatatcgtctcttctactttgttcacgacccagatgtgtgttgatag 4774
Query: 890 acatttaacgagcggta-cactggacgatttctttttacggtatgggatttgctgttttg 948
|||| |||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||
Sbjct: 4775 acatgtaacgagcggtaccactgagcgatttcttttcacggtatgggatatgctgttttg 4834
Query: 949 tctt 952
||||
Sbjct: 4835 tctt 4838
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7439
Number of Sequences: 1807
Number of extensions: 7439
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)