BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF11FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig459 1078 0.0
3x_Contig468 285 8e-77
>3x_Contig459
Length = 1510
Score = 1078 bits (544), Expect = 0.0
Identities = 600/612 (98%), Gaps = 6/612 (0%)
Strand = Plus / Plus
Query: 352 tcttctttatcatctaaagccagtttatttgcaggagttggagttcgttctcttcgaaat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttctttatcatctaaagccagtttatttgcaggagttggagttcgttctcttcgaaat 60
Query: 412 atattccaacctctatgttcattcattgaagacgaacttttagatctgctaaaccccaaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atattccaacctctatgttcattcattgaagacgaacttttagatctgctaaaccccaaa 120
Query: 472 atgttgctgaacccgtgaataccatgagaaacgggcttatcagctgtctggttctcataa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgttgctgaacccgtgaataccatgagaaacgggcttatcagctgtctggttctcataa 180
Query: 532 tcattatcggaagacgaagtagaattatcttcctttatggagtattcagatagttcaggt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcattatcggaagacgaagtagaattatcttcctttatggagtattcagatagttcaggt 240
Query: 592 ggtctattcatacggacagtgtgtgaaccttccatcatgatgaatgaatgcctgag-gac 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 241 ggtctattcatacggacagtgtgtgaaccttccatcatgatgaatgaatgcctgagcgac 300
Query: 651 tactggttcaaaagcagaaccgtagacaaagaccaaattagcaacaagagtctttggtgg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tactggttcaaaagcagaaccgtagacaaagaccaaattagcaacaagagtctttggtgg 360
Query: 711 caaccagaacacacgtcagattgtttcattatatatccaatccgttagttntttcctcca 770
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 361 caaccagaacacacgtcagattgtttcattatatatccaatccgttagttttttcctcca 420
Query: 771 tcgagatatctaataaattgttttttgtaaactgacgctgtcatctgacacaataagtta 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcgagatatctaataaattgttttttgtaaactgacgctgtcatctgacacaataagtta 480
Query: 831 taagggtgagaaattggaaattcaattatagcgcagcaaatttt-acgttacgtttaggg 889
||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 481 taa-ggtgagaaattggaatttcaattatagcgcagcaaattttaacgttacgtttaggg 539
Query: 890 aacct-cctgttnanggtggcagctcattat-gacaagttt-atatatttgttgctgaat 946
||||| |||||| | |||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 540 aacctccctgttcagggtggcagctcattatagacaagtttaatatatttgttgctgaat 599
Query: 947 gggaactgnata 958
|| ||||| |||
Sbjct: 600 ggaaactgaata 611
>3x_Contig468
Length = 2584
Score = 285 bits (144), Expect = 8e-77
Identities = 174/180 (96%), Gaps = 3/180 (1%)
Strand = Plus / Minus
Query: 86 cacgcaaagaatccatgtcagtagtatccgagtcactcgtttcaataggatcat-ctttt 144
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 178 cacgcaaagaatccatgtcagtagtatccgagtcactcgtttcaataggatcatgctttt 119
Query: 145 ttggtggggctggcactattatcaacaacattttcaaaggaatcttgtaacatcgcttct 204
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 118 ttggtggggctggcactattatcaacaacattt-caaaggaatcttgtaacatcgcttct 60
Query: 205 aacctatcattagctgaaagaagaagtttttcctccggcgaaatagcttcgtcaaaaaga 264
|||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 59 aacctatcattagctgaaagaagaagttatatctccggcgaaatagc-tcgtcaaaaaga 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6637
Number of Sequences: 1807
Number of extensions: 6637
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 2
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)