BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF11RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1452 1727 0.0
>3x_Contig1452
Length = 10057
Score = 1727 bits (871), Expect = 0.0
Identities = 914/925 (98%), Gaps = 3/925 (0%)
Strand = Plus / Plus
Query: 49 gaaggctttaagtttagttgttgagctaaaggtgggacttcaacaatgaagttatccaaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 gaaggctttaagtttagttgttgagctaaaggtgggacttcaacaatgaagttatccaaa 5611
Query: 109 tgcataataattaccaaaatataacatagcaatttgtcctccctctgtggatcgataaag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 tgcataataattaccaaaatataacatagcaatttgtcctccctctgtggatcgataaag 5671
Query: 169 aatgacttatcttttgatctaccaaattgaccaggtctagagatggtaaacctttccaaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 aatgacttatcttttgatctaccaaattgaccaggtctagagatggtaaacctttccaaa 5731
Query: 229 atgccatttaatagggcatctggagggttgtttattctttccaataattttgtcttgttg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5732 atgccatttaatagggcatctggagggttgtttattctttccaataattttgtcttgttg 5791
Query: 289 ttaactcttctgttatcgtacaccccagccaaaagtgataaataatatagtaattgcaat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 ttaactcttctgttatcgtacaccccagccaaaagtgataaataatatagtaattgcaat 5851
Query: 349 ttttgcatttgtgctgcttgtgttagagttggcaacttgttagccacatattgaaattta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5852 ttttgcatttgtgctgcttgtgttagagttggcaacttgttagccacatattgaaattta 5911
Query: 409 gtgtatgggaaatattctagcctcttttctgggtcttgctctttcatgatactgccaacg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5912 gtgtatgggaaatattctagcctcttttctgggtcttgctctttcatgatactgccaacg 5971
Query: 469 cgaataaatgaccattcctttttgggtattatgttgtataaaggataaatttgttccaca 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5972 cgaataaatgaccattcctttttgggtattatgttgtataaaggataaatttgttccaca 6031
Query: 529 tctgttgcgtctaaatcagccaacggagttggtctatcagaagatacagtttcttgcagt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6032 tctgttgcgtctaaatcagccaacggagttggtctatcagaagatacagtttcttgcagt 6091
Query: 589 tcttcctttgaaggcagttctttcgaagcagtcttcactgtgtctacaatatctatcgca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6092 tcttcctttgaaggcagttctttcgaagcagtcttcactgtgtctacaatatctatcgca 6151
Query: 649 gaatcaaccaatttgtctgaatcaatacggtttctttccatatcagcaatggccttcttt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6152 gaatcaaccaatttgtctgaatcaatacggtttctttccatatcagcaatggccttcttt 6211
Query: 709 gccttcttagtaccgaacgcctcacctaaagcgtttctcatcaatgcagcacggacgtta 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6212 gccttcttagtaccgaacgcctcacctaaagcgtttctcatcaatgcagcacggacgtta 6271
Query: 769 gcctgtttaatgtcaggtcccattaggttctttctagatttggaaagaaccttgctggat 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6272 gcctgtttaatgtcaggtcccattaggttctttctagatttggaaagaaccttgctggat 6331
Query: 829 accagtggtgccttgtacaattctacagacttcgtggcggcatcattaacacccaacaca 888
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct: 6332 accagtggtgccttgtacaattctacagacttcgtggcggcatcataaacaccaacaaca 6391
Query: 889 tactgagaagaaatttac-anatcatcgtcagtctgaacttcatattctagnctatcgtt 947
|||||||||| |||| || | |||||||||||||||| ||||||||||||| ||||||||
Sbjct: 6392 tactgagaag-aattaacaaaatcatcgtcagtctgaccttcatattctagtctatcgtt 6450
Query: 948 ttcaccatgt-acacgtatttgtcg 971
|||||||||| ||||||||||||||
Sbjct: 6451 ttcaccatgtaacacgtatttgtcg 6475
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7239
Number of Sequences: 1807
Number of extensions: 7239
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)