BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC22ZF12FM1.SCF screened BAC_end
         (974 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig842                                                         1653   0.0  

>3x_Contig842 
          Length = 3899

 Score = 1653 bits (834), Expect = 0.0
 Identities = 879/889 (98%), Gaps = 5/889 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   tgaaggatcactttttggcccataatacacatcaggagtggaaaaaggatccactacttc 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1791 tgaaggatcactttttggcccataatacacatcaggagtggaaaaaggatccactacttc 1732

                                                                        
Query: 146  ttctaatgaagaagttcttctatgtctagaacgtggtgggttattatttactttgccatc 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1731 ttctaatgaagaagttcttctatgtctagaacgtggtgggttattatttactttgccatc 1672

                                                                        
Query: 206  cattatgtatgatctattgcactgccaggataaagcgtgtcgctgacgcccgtatattat 265
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1671 cattatgtatgatctattgcactgccaggataaagcgtgtc-ctgacgcccgtatattat 1613

                                                                        
Query: 266  actgaaaagatatccagttttccctatattatctttagggattaaatgatatcaatcctt 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 actgaaaagatatccagttttccctatattatctttagggattaaatgatatcaatcctt 1553

                                                                        
Query: 326  cgctaaagggtaccttcaacgtttgtgcaattagtaaaatatattattcagttgcgattc 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 cgctaaagggtaccttcaacgtttgtgcaattagtaaaatatattattcagttgcgattc 1493

                                                                        
Query: 386  acacagaatgcttatgaatagattgctagtttctgtcctaatgcactcaagtgaaacaga 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 acacagaatgcttatgaatagattgctagtttctgtcctaatgcactcaagtgaaacaga 1433

                                                                        
Query: 446  agctctgacttggacacttcactgtttgaagataaaactaagtgaggaaggtccgtgtat 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 agctctgacttggacacttcactgtttgaagataaaactaagtgaggaaggtccgtgtat 1373

                                                                        
Query: 506  atatacacaataccttgaatcggataaataacaaggtagacgtttctttaattgtccttt 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 atatacacaataccttgaatcggataaataacaaggtagacgtttctttaattgtccttt 1313

                                                                        
Query: 566  ccctttttttttttctttctatgctttatgaagcttttcttttcatctctttccttttga 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 ccctttttttttttctttctatgctttatgaagcttttcttttcatctctttccttttga 1253

                                                                        
Query: 626  tcctttccaatatacaggaatcctctcttcttgtttctttataattacggataaacttcg 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 tcctttccaatatacaggaatcctctcttcttgtttctttataattacggataaacttcg 1193

                                                                        
Query: 686  acatcaccgctacgcaggtttctgcagagttcggatgatctgcggacttttgcaatgcaa 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 acatcaccgctacgcaggtttctgcagagttcggatgatctgcggacttttgcaatgcaa 1133

                                                                        
Query: 746  cacctgatgagtatcgagtagccaagacgtagtcaattgac-acggggataccaaacaga 804
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1132 cacctgatgagtatcgagtagccaagacgtagtcaattgacaacggggataccaaacaga 1073

                                                                        
Query: 805  tccccaggtatcctgctggtaattacttttcgatgcacaaattttaaacttgttagatgt 864
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 tccccaggtatcctgctggtaattacttttcgatgcacaaattttaaacttgttagatgt 1013

                                                                        
Query: 865  ggtattgattctcacacattttatcaccggacgtttcttttgat-atcgagctttgcctt 923
            ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1012 ggtattgattctcacacattttatcaccggacggttcttttgataatcgagctttgcctt 953

                                                             
Query: 924  tcgttaggaa--tggaacagctgcgatgggtatgttctgatagaaaaaa 970
            |||||  |||  || |||||||||||||| |||||||||||||||||||
Sbjct: 952  tcgtttagaaattgaaacagctgcgatggttatgttctgatagaaaaaa 904


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,823
Number of Sequences: 1807
Number of extensions: 12823
Number of successful extensions: 138
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)