BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZF12RM1.SCF screened BAC_end
(978 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig787 1568 0.0
>3x_Contig787
Length = 1880
Score = 1568 bits (791), Expect = 0.0
Identities = 815/822 (99%), Gaps = 1/822 (0%)
Strand = Plus / Minus
Query: 54 ttagtcgaagttaaaccattcttagtcattcttcgtcgtaatcatcataatcatcgtaaa 113
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ttagtcgaagttaaaccatacttagtcattcttcgtcgtaatcatcataatcatcgtaaa 762
Query: 114 agcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggtagtc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggtagtc 702
Query: 174 aaataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgattttatgggga 233
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 701 aaataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagttta-gggga 643
Query: 234 gggatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtgtgg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gggatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtgtgg 583
Query: 294 gtgtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgtgtg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gtgtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgtgtg 523
Query: 354 tgggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaaccttt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaaccttt 463
Query: 414 tccaattgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcatagca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tccaattgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcatagca 403
Query: 474 gcaacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggataaa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcaacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggataaa 343
Query: 534 tctctgtggaacttctcgtgaccgacaaataccaagacaaaagtgaagatgacactggaa 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tctctgtggaacttctcgtgaccgacaaataccaagacaaaagtgaagatgacactggaa 283
Query: 594 ccagtcaagatagccataactttagagtaatccttgtttgttacttcacctgcggagttc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccagtcaagatagccataactttagagtaatccttgtttgttacttcacctgcggagttc 223
Query: 654 cattcgattgggtacaaatcagccaaatcgttttcgataacgaccgaagcggcagaagcc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 cattcgattgggtacaaatcagccaaatcgttttcgataacgaccgaagcggcagaagcc 163
Query: 714 aagttacctaattgataggcaagaccagagaccaaagctctagcttctggaggagataat 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aagttacctaattgataggcaagaccagagaccaaagctctagcttctggaggagataat 103
Query: 774 tccggaagatggattggaagaacaccccagacaccaagaatggagaaccaaagcatgaac 833
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tcggaaagatggattggaagaacaccccagacaccaagaatggagaaccaaagcatgaac 43
Query: 834 cctgcaccncacacagcagaacttgtcttcaacatgaaagct 875
|||||||| ||||||||||||||||||||||||||||||||
Sbjct: 42 cctgcacccaacacagcagaacttgtcttcaacatgaaagct 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7693
Number of Sequences: 1807
Number of extensions: 7693
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)