BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC22ZG01FM1.SCF screened BAC_end (942 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1239 1594 0.0 >3x_Contig1239 Length = 4094 Score = 1594 bits (804), Expect = 0.0 Identities = 842/852 (98%), Gaps = 2/852 (0%) Strand = Plus / Minus Query: 87 ttgttaagaaactccctccgacgaatgatgaagagtcgcttccaatgaatatagactcat 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2011 ttgttaagaaactccctccgacgaatgatgaagagtcgcttccaatgaatatagactcat 1952 Query: 147 tcaggatttatttagaatccttaggggacgcggatcgtattgtggatttggaatcagcag 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1951 tcaggatttatttagaatccttaggggacgcggatcgtattgtggatttggaatcagcag 1892 Query: 207 attccaatacagatggaaagataattgatttgaaaaacggtgataggtttgggttagtta 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1891 attccaatacagatggaaagataattgatttgaaaaacggtgataggtttgggttagtta 1832 Query: 267 gattagatgagccggtctcagtgaatcaacaacggggagccaaactcaaattcaacttaa 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1831 gattagatgagccggtctcagtgaatcaacaacggggagccaaactcaaattcaacttaa 1772 Query: 327 atataagaccaggagcttggcctttcaactacagaattgtgcttactgatgtgacagatc 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1771 atataagaccaggagcttggcctttcaactacagaattgtgcttactgatgtgacagatc 1712 Query: 387 aaaaatcgccatgtacatcaaggtcaagtgactttctggactccatcatgcagcatgttt 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1711 aaaaatcgccatgtacatcaaggtcaagtgactttctggactccatcatgcagcatgttt 1652 Query: 447 cagacgaatctgattctgagaacgcatggtccaaggcaaccgattggaacgaggaaatta 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1651 cagacgaatctgattctgagaacgcatggtccaaggcaaccgattggaacgaggaaatta 1592 Query: 507 aagttgaaattggcaaggaggatgaagttgttgctgtggtagatgatactgcgccaacgg 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1591 aagttgaaattggcaaggaggatgaagttgttgctgtggtagatgatactgcgccaacgg 1532 Query: 567 tagcactcaagccaacctctgaccccagtacactgagctcgtccaaggagtcgtctgttt 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1531 tagcactcaagccaacctctgaccccagtacactgagctcgtccaaggagtcgtctgttt 1472 Query: 627 ctggtaactctcactctcgtgcatgcatttacatcaacagtgacagcgacagcgacagtg 686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1471 ctggtaactctcactctcgtgcatgcatttacatcaacagtgacagcgacagcgacagtg 1412 Query: 687 gctatgatgaccatacttttatggatccagagaagaagcaccatcacttcaaatgccgct 746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1411 gctatgatgaccatacttttatggatccagagaagaagcaccatcacttcaaatgccgct 1352 Query: 747 attagagaggaagagggaacagatcaaggtggtcgacgtttagggtgaataaggctaagg 806 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1351 ataagagaggaagagggaacagatcaaggtggtcgacgtttagggtgaataaggctaagg 1292 Query: 807 ggaag-aatttggtagaaagagaagatttgacttatatagtggttcattaggatttatgt 865 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1291 ggaagaaatttggtagaaagagaagatttgacttatatagtggttcattaggatttatgt 1232 Query: 866 tgggtttccattgttactttgggaagtttagctactgttgcaaattttgtcgcaaaataa 925 |||| |||||||| |||||||||| |||||||||||||||||||||||||| | |||| Sbjct: 1231 tggg-ttccattggtactttgggagttttagctactgttgcaaattttgtcgaaggataa 1173 Query: 926 gttgggattgtt 937 ||| |||||||| Sbjct: 1172 gtttggattgtt 1161 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5945 Number of Sequences: 1807 Number of extensions: 5945 Number of successful extensions: 48 Number of sequences better than 1.0e-20: 1 length of query: 942 length of database: 10,358,551 effective HSP length: 16 effective length of query: 926 effective length of database: 10,329,639 effective search space: 9565245714 effective search space used: 9565245714 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)