BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZG02FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1675 1604 0.0
>3x_Contig1675
Length = 13954
Score = 1604 bits (809), Expect = 0.0
Identities = 831/838 (99%), Gaps = 1/838 (0%)
Strand = Plus / Minus
Query: 85 actccagaagcacgcgttgaatgcatgaaacttccccagagatttgcatattcaaagtat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10355 actccagaagcacgcgttgaatgcatgaaacttccccagagatttgcatattcaaagtat 10296
Query: 145 caaaatattacttcacgtgacttctaaatacaaaaacaatggaaatcttaatgaaaatgc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10295 caaaatattacttcacgtgacttctaaatacaaaaacaatggaaatcttaatgaaaatgc 10236
Query: 205 ttgataccgcatatcatcatcgctagagttgaataaattgatgatatagagctgtgactc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10235 ttgataccgcatatcatcatcgctagagttgaataaattgatgatatagagctgtgactc 10176
Query: 265 cgcgtaacgtaccagcaacccattaaacatgcaggttaaccatctattaaggcaagctgt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10175 cgcgtaacgtaccagcaacccattaaacatgcaggttaaccatctattaaggcaagctgt 10116
Query: 325 caaacagaccactagagcgggacggctaggttcgaggaaacctcacaaaccgctcttgcc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10115 caaacagaccactagagcgggacggctaggttcgaggaaacctcacaaaccgctcttgcc 10056
Query: 385 tccgttacaattgtaccgtagaatcctcagagaacacagaaacttaccaacgatgcagag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10055 tccgttacaattgtaccgtagaatcctcagagaacacagaaacttaccaacgatgcagag 9996
Query: 445 agagttgggagatcaatatgtcaagaatgaattcaagttgcataagagtactgacaatcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9995 agagttgggagatcaatatgtcaagaatgaattcaagttgcataagagtactgacaatcc 9936
Query: 505 cttatacattgttggattcttagcctcatggcaggattatctgcatatgattacaagagg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9935 cttatacattgttggattcttagcctcatggcaggattatctgcatatgattacaagagg 9876
Query: 565 tgaatgggaagaaggaactttatccactgacctgcttgaaaagatgtcaccagaacaagt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9875 tgaatgggaagaaggaactttatccactgacctgcttgaaaagatgtcaccagaacaagt 9816
Query: 625 tacccagttgtacgaattgatgaaagaagctgaacagctgaaatcaggtggtgaatgatc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9815 tacccagttgtacgaattgatgaaagaagctgaacagctgaaatcaggtggtgaatgatc 9756
Query: 685 ttcggaaggttgtaagacagacatttcccaaatattatatctttcctccaaattctctca 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9755 ttcggaaggttgtaagacagacatttcccaaatattatatctttcctccaaattctctca 9696
Query: 745 agtagtgggtgaggagaagggtttatatactcaactntttgttgcacgtgacttcaaaag 804
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9695 agtagtgggtgaggagaagggtttatatactcaactttttgttgcacgtgacttcaaaag 9636
Query: 805 actttcgtcttatattgaaaa-tttcttctcgacactatntagtagttgtgtaaatgaaa 863
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 9635 actttcgtcttatattgaaaattttcttctcgacactatttagtagttgtgtaatgaaaa 9576
Query: 864 ctatgatttaaagttagtaaagtgatgagaagagatgagctgaagaaatncgcttcaa 921
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 9575 ctatgatttaaagttagtaaagtgatgagaagagatgagctgaagaaattcgcttcaa 9518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6773
Number of Sequences: 1807
Number of extensions: 6773
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)