BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZG02RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1560 1651 0.0
3x_Contig32 367 e-101
>3x_Contig1560
Length = 9209
Score = 1651 bits (833), Expect = 0.0
Identities = 877/886 (98%), Gaps = 5/886 (0%)
Strand = Plus / Minus
Query: 44 gcttgcaactacaacgaaatattgtttatagtctgttgataagcagaaggttgaatcaat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4665 gcttgcaactacaacgaaatattgtttatagtctgttgataagcagaaggttgaatcaat 4606
Query: 104 tacaatttcggtcacatcatgttgaatttcagatataattctctcataaataaaagcaat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4605 tacaatttcggtcacatcatgttgaatttcagatataattctctcataaataaaagcaat 4546
Query: 164 aggtttagctttttgtaaactaatgttcaaatcagctgaacagttgtccactggaagaag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4545 aggtttagctttttgtaaactaatgttcaaatcagctgaacagttgtccactggaagaag 4486
Query: 224 tgccacatctccagtattttgaaaacgctttagaattttagaagcgcttcttttcgaatc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4485 tgccacatctccagtattttgaaaacgctttagaattttagaagcgcttcttttcgaatc 4426
Query: 284 tgggtccaaattccactgagactctgaaatctctttccatattttacggactatcgcctt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4425 tgggtccaaattccactgagactctgaaatctctttccatattttacggactatcgcctt 4366
Query: 344 tgcatcaaaactcttagtaaactctaaatatactggtgttcgtttcaaacattcaaaaca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4365 tgcatcaaaactcttagtaaactctaaatatactggtgttcgtttcaaacattcaaaaca 4306
Query: 404 ttctcttgcggtaaagcataggttagttgaaatgtactgtctaagggaagctggaatgat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4305 ttctcttgcggtaaagcataggttagttgaaatgtactgtctaagggaagctggaatgat 4246
Query: 464 tgttatgggtaaggtttcgtgttttgacttgtgacaaaaacagatctttatcgtgttaag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4245 tgttatgggtaaggtttcgtgttttgacttgtgacaaaaacagatctttatcgtgttaag 4186
Query: 524 cttaacattaaaatgaactgaaaaagaagagaagcaattgaattgttttaaattatcagg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4185 cttaacattaaaatgaactgaaaaagaagagaagcaattgaattgttttaaattatcagg 4126
Query: 584 atcgtgatgcttttttacattacatctaggtttgagtatttggtggcacttatcttgttt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4125 atcgtgatgcttttttacattacatctaggtttgagtatttggtggcacttatcttgttt 4066
Query: 644 gcagtgacactttaaaataatggtatttacacggtatcctgtccagccacgaacaaaaat 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4065 gcagtgacactttaaaataatggtatttacacggtatcctgtccagccacgaacaaaaat 4006
Query: 704 gtaaccggtaccttcccttantagttctagaagtctttcgcggatgtttttgcactcctc 763
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4005 gtaaccggtaccttcccttataagttctagaagtctttcgcggatgtttttgcactcctc 3946
Query: 764 tatcaattgttcatttttcaaagtgatgacgtgcatttgttttttcggat-caatctttg 822
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 3945 tatcaattgttcatttttcaaagtgatgacgtgcatttgttttt-cggattcaatctttg 3887
Query: 823 tttgattattactttgatattntctatct-aaaaactgattgncttggtgtcaattttac 881
||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 3886 tttgattattactttgatattttctatctaaaaaactgattgtcttggtgtcaattttac 3827
Query: 882 aatttttgtcaccgtcaat-aaaatattatctg-atacgaagtcga 925
||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 3826 aatttttgtcaccgtcaataaaaatattatctgaatacgaagtcga 3781
>3x_Contig32
Length = 894
Score = 367 bits (185), Expect = e-101
Identities = 378/434 (87%), Gaps = 7/434 (1%)
Strand = Plus / Minus
Query: 497 acaaaaacagatctttatcgtgttaagcttaacattaaaatgaactgaaaaagaagagaa 556
||||||||| ||||||||| | |||| |||||||||||||| |||| ||||| || | ||
Sbjct: 575 acaaaaacatatctttatctttttaatcttaacattaaaattaacttaaaaataatataa 516
Query: 557 gcaattgaattgttttaaattatcaggatcgtgatgcttttttacattacatctaggttt 616
||||| |||| |||||||| | || ||| | || |||||||||||||||||| |||
Sbjct: 515 tcaatttaatttttttaaataaccattatctttatttttttttacattacatctattttt 456
Query: 617 gagtatttggtggcacttatcttgtttgcagtgacactttaaaataatggtatttacacg 676
| |||| | |||| | ||| ||| || | ||| ||||||||||| |||||||||
Sbjct: 455 tataattttttttcactaaactttttttcatttacattttaaaataattttatttacact 396
Query: 677 gtatcctgtccagccacgaacaaaaatgtaaccggtaccttcc-cttantagttctagaa 735
||||| |||| |||| ||||||||| |||||| |||||||| |||| ||||||||||
Sbjct: 395 taatcctttccatccactaacaaaaatttaaccg-taccttccgcttataagttctagaa 337
Query: 736 gtctttcgcggatgtttttgcactcctctatcaattgttcatttttcaaagtgatgacgt 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtctttcgcggatgtttttgcactcctctatcaattgttcatttttcaaagtgatgacgt 277
Query: 796 gcatttgttttttcggat-caatctttgtttgattattactttgatattntctatct-aa 853
|||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 276 gcatttgttttt-cggattcaatctttgtttgattattactttgatattttctatctaaa 218
Query: 854 aaactgattgncttggtgtcaattttacaatttttgtcaccgtcaat-aaaatattatct 912
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 217 aaactgattgtcttggtgtcaattttacaatttttgtcaccgtcaataaaaatattatct 158
Query: 913 g-atacgaagtcga 925
| ||||||||||||
Sbjct: 157 gaatacgaagtcga 144
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8068
Number of Sequences: 1807
Number of extensions: 8068
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 2
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)