BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZG07FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1159 1586 0.0
>3x_Contig1159
Length = 4873
Score = 1586 bits (800), Expect = 0.0
Identities = 859/874 (98%), Gaps = 4/874 (0%)
Strand = Plus / Minus
Query: 86 taacggttatagcactgatataccttgcccaaaacaaatgatccctgatatacttatagg 145
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4828 taacggttatagcactgatataccttgcccaaaacaaatgatccttgatatacttatagg 4769
Query: 146 tctagaaatcaaaatatacatgtctatgtcggagcgttctgtccagaagtgatggatgat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4768 tctagaaatcaaaatatacatgtctatgtcggagcgttctgtccagaagtgatggatgat 4709
Query: 206 gtatcacattttttataatttgaagtttttgtaaaaaaaaaatattgaaaagtatgaagg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4708 gtatcacattttttataatttgaagtttttgtaaaaaaaaaatattgaaaagtatgaagg 4649
Query: 266 catgaaaagtgtcgaatcaaacgttaaacatctaatagatatagctctaaattctgagag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4648 catgaaaagtgtcgaatcaaacgttaaacatctaatagatatagctctaaattctgagag 4589
Query: 326 atccgactgttcttcgctgtcaataggcttatacaaagttgctataattttatttgtgaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4588 atccgactgttcttcgctgtcaataggcttatacaaagttgctataattttatttgtgaa 4529
Query: 386 cgatatactagtgattgtccaaaaacctttggttgcttgaaagaaagagagagagataga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4528 cgatatactagtgattgtccaaaaacctttggttgcttgaaagaaagagagagagataga 4469
Query: 446 aatttagaagctataagtttatagaacaagtcactatgttgaatttcaagggttatcaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4468 aatttagaagctataagtttatagaacaagtcactatgttgaatttcaagggttatcaaa 4409
Query: 506 ttgagatcgaattgaaggacggcaaacgtatcacaggtacgctgaaacaggtgagcccca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4408 ttgagatcgaattgaaggacggcaaacgtatcacaggtacgctgaaacaggtgagcccca 4349
Query: 566 agtctttgacattgactgatgctgttttccaagatggtggtgtttcgccagtttttaaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4348 agtctttgacattgactgatgctgttttccaagatggtggtgtttcgccagtttttaaga 4289
Query: 626 ttaaagcagataaattgtatgatttgaaggtgttgaagttaccaccaaatgctaatgtta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4288 ttaaagcagataaattgtatgatttgaaggtgttgaagttaccaccaaatgctaatgtta 4229
Query: 686 agatgaacaacgggaatggtaatggtaatggtaatggtaaacaggagaaagagaangaga 745
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 4228 agatgaacaacgggaatggtaatggtaatggtaatggtaaacaggagaaggagaaggaga 4169
Query: 746 agggtaaagaaagagataggtttacggagaaagcagatgagatttnggataccgaaatgt 805
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 4168 agggtaaagaaagagataggtttacggagaaagcagatgagatttgggatacggaaatgt 4109
Query: 806 catcagattttgacttccaaggtattttgcaaagggttcaaacagaaggatgcattcagg 865
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |
Sbjct: 4108 catcagattttgacttccaaggtaatttgcaaa-ggttcaacaagaaggatgcattcaag 4050
Query: 866 gatttccagaacgttgaaattccaaaggacgagact-aaattccacattacgaaatggtc 924
|||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||
Sbjct: 4049 gatttccagaacgttgaaattccaaaggacgagactaaaatcccacataacgaaatggtc 3990
Query: 925 accgc-gggaatgtcaaggag-ctactagtgatt 956
||||| ||||||||||||||| ||||||||||||
Sbjct: 3989 accgcggggaatgtcaaggagactactagtgatt 3956
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8863
Number of Sequences: 1807
Number of extensions: 8863
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)