BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZG07RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1616 0.0
>3x_Contig1770
Length = 29267
Score = 1616 bits (815), Expect = 0.0
Identities = 880/895 (98%), Gaps = 6/895 (0%)
Strand = Plus / Plus
Query: 49 gctttctttaggtgcgactgcacttgcgttgcaaggtgggtcacttttcggattattcca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21520 gctttctttaggtgcgactgcacttgcgttgcaaggtgggtcacttttcggattattcca 21579
Query: 109 cctcggcgtattgaagggattgttggataggaatcttttacccaatatcatcaacgggac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21580 cctcggcgtattgaagggattgttggataggaatcttttacccaatatcatcaacgggac 21639
Query: 169 ctcgatgggcgcatgcgtcgcaagcatggcatgttgtctcagcgatggagagttggaaga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21640 ctcgatgggcgcatgcgtcgcaagcatggcatgttgtctcagcgatggagagttggaaga 21699
Query: 229 tctattgaccggaaacagacttgtatctacaattaaacgcgatacagcgttaatgaaaga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21700 tctattgaccggaaacagacttgtatctacaattaaacgcgatacagcgttaatgaaaga 21759
Query: 289 atgtggatacggcaacattgatgagcatttcaacatcggaactttagtagaaaatgtggt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21760 atgtggatacggcaacattgatgagcatttcaacatcggaactttagtagaaaatgtggt 21819
Query: 349 gcacaatggatactcaaaagacgtgtatctatttattaaattcattcaaaagtcggtcat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21820 gcacaatggatactcaaaagacgtgtatctatttattaaattcattcaaaagtcggtcat 21879
Query: 409 cggagatctaacttttgaagaggcgttccaaaggactgggaaggtattaaacattgttgt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21880 cggagatctaacttttgaagaggcgttccaaaggactgggaaggtattaaacattgttgt 21939
Query: 469 tcatcccacgaataagaatatatgtcctaatttgttgaactatgtgacgaccccgaacgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21940 tcatcccacgaataagaatatatgtcctaatttgttgaactatgtgacgaccccgaacgt 21999
Query: 529 tcttatatctagtgctattgattgtagtttcggaacaaacacaatcagtaagaatacttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22000 tcttatatctagtgctattgattgtagtttcggaacaaacacaatcagtaagaatacttg 22059
Query: 589 gctattgggtaaaaacatagaaaacaaaatagtggactatttggatagaaaagagcccca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22060 gctattgggtaaaaacatagaaaacaaaatagtggactatttggatagaaaagagcccca 22119
Query: 649 ttaccaggagttgaaattttcggcaccacaatacgttcaggattcgagccaattggaggc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22120 ttaccaggagttgaaattttcggcaccacaatacgttcaggattcgagccaattggaggc 22179
Query: 709 cccatataccagactcacggaattattcaatgtaaacaattttattgtttcctttagc-a 767
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 22180 cccatataccagactcacggaattattcaatgtaaacaattttattgtttcc-ttagcaa 22238
Query: 768 gaccctattntgcaccattagcattgaacgactt-aaacacgatattagaacgtctgagt 826
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 22239 gaccctatttggcaccattagcattgaacgacttaaaacacgatattagaacgtctgagt 22298
Query: 827 actattactacaagaagttcccatacatcgatcccagatcatattcaccattgc-actat 885
||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||
Sbjct: 22299 actattactacaagaggttcccatacatcgatccaggatcatattcaccaatgcaactat 22358
Query: 886 ccaaggttaccaaa-tngnaccattagcattcaaa-ttaaataccacttgnaaag 938
|||||||||||||| | | |||||||||||||||| |||||||||||||| ||||
Sbjct: 22359 ccaaggttaccaaattggaaccattagcattcaaatttaaataccacttggaaag 22413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6381
Number of Sequences: 1807
Number of extensions: 6381
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)