BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZG09FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1416 1620 0.0
>3x_Contig1416
Length = 10161
Score = 1620 bits (817), Expect = 0.0
Identities = 877/890 (98%), Gaps = 7/890 (0%)
Strand = Plus / Plus
Query: 88 ttaaattccaccatataacagtgggttggttggcaaaagaataacgcaaattataatcgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5492 ttaaattccaccatataacagtgggttggttggcaaaagaataacgcaaattataatcgt 5551
Query: 148 cgtggtttggggtatattgtggttggaacttgtccatgaatccaaatggaccaaagtcaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 cgtggtttggggtatattgtggttggaacttgtccatgaatccaaatggaccaaagtcaa 5611
Query: 208 tagaaagacctagaattgaagtgttgtctgtattcaagacaccgttacagaacccatatg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 tagaaagacctagaattgaagtgttgtctgtattcaagacaccgttacagaacccatatg 5671
Query: 268 cttgccagtatgccacacactctgcattcaacgtgactatgtgtctgaataatttatcgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 cttgccagtatgccacacactctgcattcaacgtgactatgtgtctgaataatttatcgt 5731
Query: 328 aatttgtcaaaccatcatcgacctttgacgaacgtagctctttgttgttcacagtatcag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5732 aatttgtcaaaccatcatcgacctttgacgaacgtagctctttgttgttcacagtatcag 5791
Query: 388 acgttccttcgaaataatttgcactgaagctgtttaatgcaacagtgtctctgtagtctt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 acgttccttcgaaataatttgcactgaagctgtttaatgcaacagtgtctctgtagtctt 5851
Query: 448 tcaatccttcgaaaacatgattgattgaaaagtctgctaatttcaagagaccctcatcat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5852 tcaatccttcgaaaacatgattgattgaaaagtctgctaatttcaagagaccctcatcat 5911
Query: 508 cctgtttccatctaaacaaatcaaaattaccgattcttatccaacttggtgcaaatctcg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5912 cctgtttccatctaaacaaatcaaaattaccgattcttatccaacttggtgcaaatctcg 5971
Query: 568 ttatcacagcgcaaggctcaaaaacagatcttcttgctctagtcttcggtagcgatgaga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5972 ttatcacagcgcaaggctcaaaaacagatcttcttgctctagtcttcggtagcgatgaga 6031
Query: 628 tttgcaatgccctagaagacggaataccaatggcgtgcaaactctcacatatgagaaact 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6032 tttgcaatgccctagaagacggaataccaatggcgtgcaaactctcacatatgagaaact 6091
Query: 688 ctctaatacttgatctgactacagctntcccgtcagcaaatcttgaatatggagttaatc 747
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6092 ctctaatacttgatctgactacagctttcccgtcagcaaatcttgaatatggagttaatc 6151
Query: 748 cactcccttttaactggacggtttgcagttttagattccttatccttgatatcgaaaagg 807
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6152 cactcccttttaactggacggtttgcag-tttagattccttatccttgatatcgaaaagg 6210
Query: 808 gtgagaactcttccgtcccccaattgtcctgcanactcaccgaattgaaaccc-gcataa 866
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 6211 ttgagaactcttccgtcccccaattgtcctgcaaactcaccgaattgaaacccggcataa 6270
Query: 867 gcgagactataag--aaaaattctctcgattcatcgatgtacacgntctgacccctgggc 924
||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 6271 gcgagactataaggaaaaatttctctcgattcatcgatgtacacg-tctgacccctggca 6329
Query: 925 aatgtttattaatgacgaatcacttttcaaactgtaaatc-tccaatgcc 973
|||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 6330 aatgtttattaatgacgaatcacttttc-aactgtaaatcttccaatgcc 6378
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5938
Number of Sequences: 1807
Number of extensions: 5938
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)