BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZG09RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1317 1298 0.0
3x_Contig1598 355 1e-97
>3x_Contig1317
Length = 5616
Score = 1298 bits (655), Expect = 0.0
Identities = 722/737 (97%), Gaps = 6/737 (0%)
Strand = Plus / Minus
Query: 237 gggttgtcaattttatacattcacagctaatatatgcagtatagttaatgtagcttatca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5611 gggttgtcaattttatacattcacagctaatatatgcagtatagttaatgtagcttatca 5552
Query: 297 gtaaactcgaatctatatcctcctgcacttttctggttaagttggcctgcctgttaaagt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5551 gtaaactcgaatctatatcctcctgcacttttctggttaagttggcctgcctgttaaagt 5492
Query: 357 ttcccgttttttcgttaaatgttcatgagaacgaaacagaaatttagtgcaccgtcagaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5491 ttcccgttttttcgttaaatgttcatgagaacgaaacagaaatttagtgcaccgtcagaa 5432
Query: 417 tatcgtaagaaacactaataaaccaaacaaagaaattgcaatgagtactagctgttgtct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5431 tatcgtaagaaacactaataaaccaaacaaagaaattgcaatgagtactagctgttgtct 5372
Query: 477 ataaaagtatatttcgatgtaatatttatgctgtttatatattatattagcaatcgttaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5371 ataaaagtatatttcgatgtaatatttatgctgtttatatattatattagcaatcgttaa 5312
Query: 537 gggttgccaggctttctagcaactacgtaccaattatccttttcgtaaccttgtccaact 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5311 gggttgccaggctttctagcaactacgtaccaattatccttttcgtaaccttgtccaact 5252
Query: 597 attattcctccggccatttggcaatcctcttctagttccccctcgcgatatagatggtag 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5251 attattcctccggccatttggcaatcctcttctagttccccctcgcgatatagatggtag 5192
Query: 657 taacgatacttcgtgttggattttgtctccttttcgagcttcttgcgctcttcctctatt 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5191 taacgatacttcgtgttggattttgtctccttttcgagcttcttgcgctcttcctctatt 5132
Query: 717 tcctgctctctttttagcctgagagcttcctgttctagtttccatttgttcaagaattca 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5131 tcctgctctctttttagcctgagagcttcctgttctagtttccatttgttcaagaattca 5072
Query: 777 gatctttcatgtttaggaacggtggataaatctggctttgggacttgtattttgccc-tt 835
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 5071 gatctttcatgtttaggaacggtggataaatctggcttggggacttgtattttgcccttt 5012
Query: 836 ttaccagatttctcatcaatttcccgtat-ccttttctgatctttgtaaaccccac-gta 893
|||||||||||||||||||||| |||||| ||| |||||||| ||||||| ||||| |||
Sbjct: 5011 ttaccagatttctcatcaattt-ccgtatccctcttctgatc-ttgtaaaacccacggta 4954
Query: 894 ctaaaacgtctttgtccataccctctcgataccctcttcttaaatcaccttgttnc-atg 952
|||||||||||| |||||||||||||||||||||||||| |||||||||||| | |||
Sbjct: 4953 ctaaaacgtcttgttccataccctctcgataccctcttctagaatcaccttgttccaatg 4894
Query: 953 cccagcagtnaatcaaa 969
||||||||| |||||||
Sbjct: 4893 cccagcagtaaatcaaa 4877
>3x_Contig1598
Length = 11902
Score = 355 bits (179), Expect = 1e-97
Identities = 191/195 (97%)
Strand = Plus / Plus
Query: 51 acattaggcaattcattagtggggaaagacgttatcatttgaaactcgttgagcttttgc 110
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11708 acattaggcaattcatcagtggggaaagacgttatcatttgaaactcgttgagcttttgc 11767
Query: 111 tcttctgagtgggagagttcaaatcgttgatcattatgttcaattactggcattttaagg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11768 tcttctgagtgggagagttcaaatcgttgatcattatgttcaattactggcattttaagg 11827
Query: 171 ttcgttacaaatcacagtacgctcaagcagatatactttaattcggatctcaatgccaaa 230
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 11828 ttcgttacaaatcacagtacgctcaagcagatatactttccctcggatctcaatgccaaa 11887
Query: 231 aatactgggttgtca 245
|||||||||||||||
Sbjct: 11888 aatactgggttgtca 11902
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6753
Number of Sequences: 1807
Number of extensions: 6753
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)