BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZG12RM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1353 1723 0.0
>3x_Contig1353
Length = 8234
Score = 1723 bits (869), Expect = 0.0
Identities = 925/936 (98%), Gaps = 6/936 (0%)
Strand = Plus / Minus
Query: 49 gcttttaataagactaagcgagaatctgaagaaaagaaaaatagatcacgtgaaaattat 108
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2923 gcttttaataagactaagcgagaacctgaagaaaagaaaaatagatcacgtgaaaattat 2864
Query: 109 tatcacgtgattggtattaaataatcgttttggattctaagtaggttatacaatggaaag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 tatcacgtgattggtattaaataatcgttttggattctaagtaggttatacaatggaaag 2804
Query: 169 ctcggggtttgtttgattacgatcatccgtgaaaccctgtccgcaatcttttgntt-tgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 2803 ctcggggtttgtttgattacgatcatccgtgaaaccctgtccgcaatcttttgtttatgt 2744
Query: 228 tttttgttttcactgttgtctccttccacctgtgtcacatttgtcacttcatttcccccg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 tttttgttttcactgttgtctccttccacctgtgtcacatttgtcacttcatttcccccg 2684
Query: 288 ctctaaatagaaaaaaaaaaggcgattagaattttgctgacactaaatcctgtcggcatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2683 ctctaaatagaaaaaaaaaaggcgattagaattttgctgacactaaatcctgtcggcatc 2624
Query: 348 gggtaaaataaggtaaaaagggaatatgtatcagaaataatgaatggatcacgcagggaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2623 gggtaaaataaggtaaaaagggaatatgtatcagaaataatgaatggatcacgcagggaa 2564
Query: 408 acagccgcagggatcccgtgcgaatttggagatgttccagcacatgaccttgtacttaaa 467
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 acagccgcaggaatcccgtgcgaatttggagatgttccagcacatgaccttgtacttaaa 2504
Query: 468 ttgtagagtatctgttctttcatttgttgtcatgcattcagggctgattctatttctaac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 ttgtagagtatctgttctttcatttgttgtcatgcattcagggctgattctatttctaac 2444
Query: 528 ggccagtcacacaaaatgttgtactgattccttgtatcaatcctagattatctctacaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 ggccagtcacacaaaatgttgtactgattccttgtatcaatcctagattatctctacaaa 2384
Query: 588 gtccgttaacttgagaatttttttggtgatgactataatgattcaccaagaaagtcacaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 gtccgttaacttgagaatttttttggtgatgactataatgattcaccaagaaagtcacaa 2324
Query: 648 -tcctggaccaaaagaaaatcctgaatgtttgatgattatgatgatgatatgatgttaat 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2323 ttcctggaccaaaagaaaatcctgaatgtttgatgattatgatgatgatatgatgttaat 2264
Query: 707 gatcagcaatatcatggctaattactttcatgaggaagagaaacgttttttttttttttc 766
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2263 gatcagcaatatcatggctaattactttcatgaggaagagaaac-ttttttttttttttc 2205
Query: 767 gtagatatataaatcacagccttttcgtgcaaacctgaagcatacacttagataagaaga 826
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2204 gtagatatataaatcacagcctttcggtgcaaacctgaagcatacacttagataagaaga 2145
Query: 827 acattcagtaccgaggtatatgaaattggtctgatcaaagtgcaccaaagctaacgtata 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2144 acattcagtaccgaggtatatgaaattggtctgatcaaagtgcaccaaagctaacgtata 2085
Query: 887 t-tatacagtatcacttcgacg-acactattgaaaagggaaaaa-gagtgacgcctccat 943
| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 2084 tatatacagtatcacttcgacgaacactattgaaaagggaaaaatgagtgacgcctccat 2025
Query: 944 tgaaattgaattggaaacatcgcatgttaatgatgt 979
||||||||||||||||||||||||||||||||||||
Sbjct: 2024 tgaaattgaattggaaacatcgcatgttaatgatgt 1989
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,549
Number of Sequences: 1807
Number of extensions: 18549
Number of successful extensions: 387
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)