BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH01RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig589 1400 0.0
>3x_Contig589
Length = 2261
Score = 1400 bits (706), Expect = 0.0
Identities = 827/854 (96%), Gaps = 12/854 (1%)
Strand = Plus / Minus
Query: 103 tcatctgctggttcaccgtcatctgtgaagtcggcttcttcatcactatcttcaatgaat 162
|||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct: 2260 tcatctgctggt-caccgtcatctgt-aagtcggctc--tcatcactatcttca-tgaat 2206
Query: 163 tcttttgaaagtggtctggacttacctctcttagagtcaccattttgaactccgttcaat 222
||||| |||||||||||||||| |||||||||||| |||||||||||| |||||||||||
Sbjct: 2205 tcttt-gaaagtggtctggact-acctctcttaga-tcaccattttga-ctccgttcaat 2150
Query: 223 tgatcatcatcctcatcatcttcatcaacgatttttttggcagttcttctctttttcttt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2149 tgatcatcatcctcatcatcttcatcaacgatttttttggcagttcttctctttttcttt 2090
Query: 283 gaagatttactatcagagtctgcttttctctttgctttcttccctttcttagatggtgct 342
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2089 gaagatttactatcagagtctgcttttctctttgctttcttccctgtcttagatggtgct 2030
Query: 343 ttataagacccgtcttcttcttgaggtaggtcatcgttgtcattgtcgtcatcaacaatc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 ttataagacccgtcttcttcttgaggtaggtcatcgttgtcattgtcgtcatcaacaatc 1970
Query: 403 tcctcttgcgcggtacgttcttggatcaacctttgtgcttcttcttgcaattttctgtat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 tcctcttgcgcggtacgttcttggatcaacctttgtgcttcttcttgcaattttctgtat 1910
Query: 463 tcctccgccagtttttcacttttgatcttttcttcttccttctgttgggcgtccctttga 522
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 tcctccgccagtttttcactgttgatcttttcttcttccttctgttgggcgtccctttga 1850
Query: 523 gcttcaagctcacgttgttcttccaaaactttacgagcattttccattttggctgagatt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 gcttcaagctcacgttgttcttccaaaactttacgagcattttccattttggctgagatt 1790
Query: 583 tccaattcatacgccttttggtcttctatactgcgctctagtgctgttttcatggtggtc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 tccaattcatacgccttttggtcttctatactgcgctctagtgctgttttcatggtggtc 1730
Query: 643 tcacctagttgaatacgttgctctaattgttctgaaggaattactatggatttagtttcc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 tcacctagttgaatacgttgctctaattgttctgaaggaattactatggatttagtttcc 1670
Query: 703 agaagttcttttaataatgaaataccgtattgcaacccctcaatactggcttcaagaatc 762
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1669 agaagttcttttaataatgaaataccgtattgcaacccctcaatactggcttcaag-atc 1611
Query: 763 agccatggttctttctttaggactagatcttctcatttgctncggcacttggaattccca 822
||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct: 1610 agccatggttctttctttaggactagatcttctcatttgctcggcaacttggaattccaa 1551
Query: 823 atatgcaagggtgaacttatagctactggtcatcttacccgttactttcgcagattctaa 882
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1550 taatgcaaggttgaacttatagctactggtcatcttaccgtttactttcgcagattctaa 1491
Query: 883 atcatacgcacg-ttgacataaccaancgctttctgaacagcttc-agagacctttcctt 940
|||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 1490 atcatacgcacgtttgacataaccaagcgctttctgaacagcttcaagagacctttcctt 1431
Query: 941 ganagctcttagat 954
|| |||||||||||
Sbjct: 1430 gagagctcttagat 1417
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9360
Number of Sequences: 1807
Number of extensions: 9360
Number of successful extensions: 128
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)