BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH02FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1566 0.0
>3x_Contig1766
Length = 23951
Score = 1566 bits (790), Expect = 0.0
Identities = 838/849 (98%), Gaps = 4/849 (0%)
Strand = Plus / Plus
Query: 87 tctacatcaaggtatatcttttggaatttttatatatctagtctcaaaccaaatccgctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13781 tctacatcaaggtatatcttttggaatttttatatatctagtctcaaaccaaatccgctt 13840
Query: 147 tgagaatacctagacccgcatacgcttaggcatgtacatagatagaatatataagatcta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13841 tgagaatacctagacccgcatacgcttaggcatgtacatagatagaatatataagatcta 13900
Query: 207 atttcaactgtgcttcgaagaacacgcaagttgaacttaacaaaccccggagaataggca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13901 atttcaactgtgcttcgaagaacacgcaagttgaacttaacaaaccccggagaataggca 13960
Query: 267 attcatatacttaaagattggaggcgcggcatttgtccctcaaatgcatggtaaccataa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13961 attcatatacttaaagattggaggcgcggcatttgtccctcaaatgcatggtaaccataa 14020
Query: 327 ccatcaatccattccaatccaagtggaatctgaattctagacggaggtctcgaagagacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14021 ccatcaatccattccaatccaagtggaatctgaattctagacggaggtctcgaagagacc 14080
Query: 387 atcatcttcacccatacttactgatcgcacgatcgtttctatgaacattctttctcgatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14081 atcatcttcacccatacttactgatcgcacgatcgtttctatgaacattctttctcgatc 14140
Query: 447 tcaattccgttacgatgatctggaaagaaaaagacggattttttcgaaaaaagacgtttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14141 tcaattccgttacgatgatctggaaagaaaaagacggattttttcgaaaaaagacgtttt 14200
Query: 507 atttttattgtttgaattttccattttttttttttttttggcgaagcacctttccttttg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14201 atttttattgtttgaattttccattttttttttttttttggcgaagcacctttccttttg 14260
Query: 567 atctattttgcttgaatgattttcagatcaaatatagtataaataaaatgtgttacatgt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14261 atctattttgcttgaatgattttcagatcaaatatagtataaataaaatgtgttacatgt 14320
Query: 627 taacaagtacatgagatttaaactttgatctgtagtttgtacgttgcctttttttttgct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14321 taacaagtacatgagatttaaactttgatctgtagtttgtacgttgcctttttttttgct 14380
Query: 687 ctgtataggttgactcacttgtgcagagtgaatattagctggcacatctttttccatttg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14381 ctgtataggttgactcacttgtgcagagtgaatattagctggcacatctttttccatttg 14440
Query: 747 gtttagagaggaggaacagttgttatttcgatctgatatattgaggaaatatgcagtttg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14441 gtttagagaggaggaacagttgttatttcgatctgatatattgaggaaatatgcagtttg 14500
Query: 807 tgataccgctgctattattagtctctgcgataaaacc-gttctgggtcagcagtctgccg 865
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 14501 tgataccgctgctattattagtctctgcgataaaaccagttctgggtcagcagtctgcgg 14560
Query: 866 cggaaaatgacgggagggat-acgggcagcaacgggtcaacaag-acactatctncctcc 923
||||||||||| |||||||| |||| |||||||| ||||||| ||||||||| | |||
Sbjct: 14561 cggaaaatgac-ggagggataacggcaagcaacggtacaacaagtacactatctccttcc 14619
Query: 924 tcatctttg 932
|||||||||
Sbjct: 14620 tcatctttg 14628
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,750
Number of Sequences: 1807
Number of extensions: 17750
Number of successful extensions: 2558
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)